View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: F9482H-LTR4-TNT-insertion-20 (Length: 792)
Name: F9482H-LTR4-TNT-insertion-20
Description: F9482H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] F9482H-LTR4-TNT-insertion-20
[» ] chr3 (3 HSPs)
[» ] scaffold0319 (1 HSPs)
Alignment Details
Target: chr3 (Bit Score: 757; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 8 - 792
Target Start/End: Complemental strand, 22454520 - 22453736
Alignment:
Q
8
catccttcaaacaatctctttacctacaccaccaaaccgatcaaagcgtgctacatttccccaaacccgaagataacnnnnnnnntattattcaaagctt
107
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
T
22454520
catccttcaaacaatctctttacctacaccaccaaaccgatcaaagcgtgctacatttccccaaacccgaagataacaaaaaaaatattattcaaagctt
22454421
T
Q
108
tgttcattttgccacatctcgcaccttactaaaacgtacgaaaccaaaaacctgacctctggcatttctattatgggaaacaaagattaaagaatataca
207
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
T
22454420
tgttcattttgccacatctcgcaccttactaaaacgtacgaaaccaaaaacctgacctctagcatttctattatgggaaacaaagattaaagaatataca
22454321
T
Q
208
ataaacctcaaaaccttttctcagctctccaaattgtaaattataaggaatgttggtaaagtataaagtagccattctggatggaagtgatttccttgct
307
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
22454320
ataaacctcaaaaccttttctcagctctccaaattgtaaattataaggaatgttggtaaagtataaagtagccattctggatggaagtgatttccttgct
22454221
T
Q
308
ataagattgcttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattatgccaccactctccaccgtttcctggaacttt
407
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
22454220
ataagattgcttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattatgccaccactctccaccgtttcctggaacttt
22454121
T
Q
408
ggaacggttcagctcccaaacaattttcttccggcgacgctcgattcttctctccatggtttgcccttggccgttcatggcggccttagattcgaaggtg
507
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
22454120
ggaacggttcagctcccaaacaattttcttccggcgacgctcgattcttctctccatggtttgcccttggccgttcatggcggccttagattcgaaggtg
22454021
T
Q
508
gacaaacagctacaaacgacggcgaaaccatcggaatccacaaaatcctttgctcaagctctcgctggcactgcttctgatgcggatttcttggttcatc
607
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
22454020
gacaaacagctacaaacgacggcgaaaccatcggaatccacaaaatcctttgctcaagctctcgctggcactgcttctgatgcggatttcttggttcatc
22453921
T
Q
608
ttcctcccaaggtggttatgggggattcagtccgtataaggatctctaaagcagcctatgaatctggtttagctgcttgcagaactcatctccatggaag
707
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
22453920
ttcctcccaaggtggttatgggggattcagtccgtataaggatctctaaagcagcctatgaatctggtttagctgcttgcagaactcatctccatggaag
22453821
T
Q
708
attaacacttcacaaaggagattcaccagttacgacgctagcactgaaagaacgactcaacaaactatggcctcaactgaagaat
792
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
22453820
attaacacttcacaaaggagattcaccagttacgacgctagcactgaaagaacgactcaacaaactatggcctcaactgaagaat
22453736
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 17652441 - 17652498
Alignment:
Q
318
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat
376
Q
||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||||
T
17652441
ttttaaaacaaacatattaaatttaaggataaaatatatttttag-tcctataaattat
17652498
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 21296265 - 21296208
Alignment:
Q
318
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat
376
Q
||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||||
T
21296265
ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattat
21296208
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0319 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 12941 - 12998
Alignment:
Q
318
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat
376
Q
||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||||
T
12941
ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattat
12998
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 4072053 - 4072110
Alignment:
Q
318
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat
376
Q
||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||||
T
4072053
ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattat
4072110
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 41322995 - 41323052
Alignment:
Q
318
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat
376
Q
||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||||
T
41322995
ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattat
41323052
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 39720214 - 39720157
Alignment:
Q
318
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat
376
Q
||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||||
T
39720214
ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattat
39720157
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 46211280 - 46211337
Alignment:
Q
318
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat
376
Q
||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||||
T
46211280
ttttaaaacaaacatattaaatttaaggataaaatatatttttag-tcctataaattat
46211337
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 29363008 - 29363065
Alignment:
Q
318
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat
376
Q
||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||||
T
29363008
ttttaaaacaaacatattaaatttaaggataaaatatatttttag-tcctataaattat
29363065
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 13517831 - 13517774
Alignment:
Q
318
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat
376
Q
||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||||
T
13517831
ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattat
13517774
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 43892334 - 43892391
Alignment:
Q
318
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat
376
Q
||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||||
T
43892334
ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattat
43892391
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University
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