View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9482H-LTR4-TNT-insertion-20 (Length: 792)
Name: F9482H-LTR4-TNT-insertion-20
Description: F9482H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9482H-LTR4-TNT-insertion-20 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0319 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 757; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 8 - 792
Target Start/End: Complemental strand, 22454520 - 22453736
Alignment:
| Q |
8 |
catccttcaaacaatctctttacctacaccaccaaaccgatcaaagcgtgctacatttccccaaacccgaagataacnnnnnnnntattattcaaagctt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22454520 |
catccttcaaacaatctctttacctacaccaccaaaccgatcaaagcgtgctacatttccccaaacccgaagataacaaaaaaaatattattcaaagctt |
22454421 |
T |
|
| Q |
108 |
tgttcattttgccacatctcgcaccttactaaaacgtacgaaaccaaaaacctgacctctggcatttctattatgggaaacaaagattaaagaatataca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
22454420 |
tgttcattttgccacatctcgcaccttactaaaacgtacgaaaccaaaaacctgacctctagcatttctattatgggaaacaaagattaaagaatataca |
22454321 |
T |
|
| Q |
208 |
ataaacctcaaaaccttttctcagctctccaaattgtaaattataaggaatgttggtaaagtataaagtagccattctggatggaagtgatttccttgct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22454320 |
ataaacctcaaaaccttttctcagctctccaaattgtaaattataaggaatgttggtaaagtataaagtagccattctggatggaagtgatttccttgct |
22454221 |
T |
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| Q |
308 |
ataagattgcttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattatgccaccactctccaccgtttcctggaacttt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22454220 |
ataagattgcttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattatgccaccactctccaccgtttcctggaacttt |
22454121 |
T |
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| Q |
408 |
ggaacggttcagctcccaaacaattttcttccggcgacgctcgattcttctctccatggtttgcccttggccgttcatggcggccttagattcgaaggtg |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22454120 |
ggaacggttcagctcccaaacaattttcttccggcgacgctcgattcttctctccatggtttgcccttggccgttcatggcggccttagattcgaaggtg |
22454021 |
T |
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| Q |
508 |
gacaaacagctacaaacgacggcgaaaccatcggaatccacaaaatcctttgctcaagctctcgctggcactgcttctgatgcggatttcttggttcatc |
607 |
Q |
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| T |
22454020 |
gacaaacagctacaaacgacggcgaaaccatcggaatccacaaaatcctttgctcaagctctcgctggcactgcttctgatgcggatttcttggttcatc |
22453921 |
T |
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| Q |
608 |
ttcctcccaaggtggttatgggggattcagtccgtataaggatctctaaagcagcctatgaatctggtttagctgcttgcagaactcatctccatggaag |
707 |
Q |
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| T |
22453920 |
ttcctcccaaggtggttatgggggattcagtccgtataaggatctctaaagcagcctatgaatctggtttagctgcttgcagaactcatctccatggaag |
22453821 |
T |
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| Q |
708 |
attaacacttcacaaaggagattcaccagttacgacgctagcactgaaagaacgactcaacaaactatggcctcaactgaagaat |
792 |
Q |
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| T |
22453820 |
attaacacttcacaaaggagattcaccagttacgacgctagcactgaaagaacgactcaacaaactatggcctcaactgaagaat |
22453736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 17652441 - 17652498
Alignment:
| Q |
318 |
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat |
376 |
Q |
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| T |
17652441 |
ttttaaaacaaacatattaaatttaaggataaaatatatttttag-tcctataaattat |
17652498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 21296265 - 21296208
Alignment:
| Q |
318 |
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat |
376 |
Q |
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| T |
21296265 |
ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattat |
21296208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 12941 - 12998
Alignment:
| Q |
318 |
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat |
376 |
Q |
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| T |
12941 |
ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattat |
12998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 4072053 - 4072110
Alignment:
| Q |
318 |
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat |
376 |
Q |
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| T |
4072053 |
ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattat |
4072110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 41322995 - 41323052
Alignment:
| Q |
318 |
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat |
376 |
Q |
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| T |
41322995 |
ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattat |
41323052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 39720214 - 39720157
Alignment:
| Q |
318 |
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat |
376 |
Q |
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| T |
39720214 |
ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattat |
39720157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 46211280 - 46211337
Alignment:
| Q |
318 |
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat |
376 |
Q |
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| T |
46211280 |
ttttaaaacaaacatattaaatttaaggataaaatatatttttag-tcctataaattat |
46211337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 29363008 - 29363065
Alignment:
| Q |
318 |
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat |
376 |
Q |
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| T |
29363008 |
ttttaaaacaaacatattaaatttaaggataaaatatatttttag-tcctataaattat |
29363065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 13517831 - 13517774
Alignment:
| Q |
318 |
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat |
376 |
Q |
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| T |
13517831 |
ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattat |
13517774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 43892334 - 43892391
Alignment:
| Q |
318 |
ttttaaaactaacatattaaatttaagtgttgaatatatttttagttcctataaattat |
376 |
Q |
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| T |
43892334 |
ttttaaaacaaacatattaaatttaagaataaaatatatttttag-tcctataaattat |
43892391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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