View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9482H-LTR4-TNT-insertion-21 (Length: 290)
Name: F9482H-LTR4-TNT-insertion-21
Description: F9482H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9482H-LTR4-TNT-insertion-21 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 9 - 280
Target Start/End: Complemental strand, 6689558 - 6689287
Alignment:
| Q |
9 |
cagcaactaagctttaatcctctggataagtattttccnnnnnnnnnnnngataaggtggttctctaccatttcactttggataaatcatataaagagtt |
108 |
Q |
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| T |
6689558 |
cagcaactaagctttaatcctctggataagtattttcctatatatatatagataaggtggttctctaccatttcactttggataaatcatataaagagtt |
6689459 |
T |
|
| Q |
109 |
tacaaatcttaattcaattgataaaaatatcaaaattgttaggatacacaccattattgaggtttgaatcctgacactctcacttgtgtcgtgagtttat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6689458 |
tacaaatcttaattcaattgataaaaatatcaaaattgttaggatacacactattattgaggtttgaatcctgacactctcacttgtgtcgtgagtttat |
6689359 |
T |
|
| Q |
209 |
accgactttgccattacgtctatttatcnnnnnnnnnnnntcgaacaatttagatttttgtttttgttatta |
280 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6689358 |
accgactttgccattacgtctatttatcaaaaaagaaaaatcgaacaatttagatttttgtttttgttatta |
6689287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 46796809 - 46796851
Alignment:
| Q |
109 |
tacaaatcttaattcaattgataaaaatatcaaaattgttagg |
151 |
Q |
| |
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||||||||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
46796809 |
tacaaatcttatttcaattgacaaaaatatcaaaattgttagg |
46796851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 43565828 - 43565788
Alignment:
| Q |
110 |
acaaatcttaattcaattgataaaaatatcaaaattgttag |
150 |
Q |
| |
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|
|
| T |
43565828 |
acaaatcttaactcaattgataaaaatatcgaaattgttag |
43565788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 41167976 - 41167938
Alignment:
| Q |
112 |
aaatcttaattcaattgataaaaatatcaaaattgttag |
150 |
Q |
| |
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|||||||||||||||| |||||||| ||||||||||||| |
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|
| T |
41167976 |
aaatcttaattcaattaataaaaatgtcaaaattgttag |
41167938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 32291816 - 32291861
Alignment:
| Q |
106 |
gtttacaaatcttaattcaattgataaaaatatcaaaattgttagg |
151 |
Q |
| |
|
||||||||||||||| |||||| | ||||||||||||||| ||||| |
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|
| T |
32291816 |
gtttacaaatcttaactcaattaacaaaaatatcaaaattattagg |
32291861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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