View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9482H-LTR4-TNT-insertion-22 (Length: 577)
Name: F9482H-LTR4-TNT-insertion-22
Description: F9482H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9482H-LTR4-TNT-insertion-22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 525; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 7 - 567
Target Start/End: Original strand, 11136697 - 11137257
Alignment:
| Q |
7 |
agtttttcttaccttgtaaccttattttgattatgcttataagttctttcttaatgtgattattattgttgtttttcgcagtcctgtatttacacacatg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11136697 |
agtttttcttaccttgtaaccttattttgattatgcttataagttctttcttaatgtgattattattgttgtttttcgcagtcctgtatttacacacatg |
11136796 |
T |
|
| Q |
107 |
gctggaagctcttcggtgtggaaggcgctatcacctacagttctacaagctgctttcaatgtcgatccagaagttgagaaactcttccgttcaaagagga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11136797 |
gctggaagctcttcggtgtggaaggcgctatcacctacagttctacaagctgctttcaatgtcgatccagaagttgagaaactcttccgttcaaagagga |
11136896 |
T |
|
| Q |
207 |
ctgccgatgccattttcttccctcctccaaattgaagtagaatggaattaagnnnnnnnnnnnnatggcaatgaaaatatgttttaacaagccgttatag |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11136897 |
ctgccgatgccattttcttccctcctccaaattgaagtagaatggaattaagtttttattttttatggcaatgaaaatatgttttaacaagccgttatag |
11136996 |
T |
|
| Q |
307 |
acaatagtttttatctagtttataaagtttctgcacttttattttggatttataaggagttgattgcctcaaatgattttttcgggttgacctctatttt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11136997 |
acaatagtttttatctagtttataaagtttctgcacttttattttggatttataaggagttgattgcctcaaatgattttttcgggttgacctctatttt |
11137096 |
T |
|
| Q |
407 |
gatctttctttatattgctgccttatatatagttatttttctgtctataagatgcaatttttgcataatgaatactaatatagaaagaagacagtagaca |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11137097 |
gatctttctttatattgctgccttatatatagttatttttctgtctataagatgcaatttttgcataatgaatactaatatagaaagaagacagtagaca |
11137196 |
T |
|
| Q |
507 |
gctgaaaaaacttcgattaagtataagtttggacgaatgatctctcacaaggacttgaatt |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11137197 |
gctgaaaaaacttcgattaagtataagtttggacgaatgatctctcacaaggacttgaatt |
11137257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 55 - 550
Target Start/End: Complemental strand, 23258258 - 23257751
Alignment:
| Q |
55 |
tcttaatgtgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaggcgctatcacctacagttctacaa |
154 |
Q |
| |
|
||||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
23258258 |
tcttactgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactatcacctacagttctgcag |
23258160 |
T |
|
| Q |
155 |
gctgctttcaatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattgaagtagaatggaat |
254 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23258159 |
gctgctttcaatgttgatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaatggaaa |
23258060 |
T |
|
| Q |
255 |
taag----nnnnnnnnnnnnatggcaatgaaaatatgttttaacaagccgttatagacaatagtttttatctagtttataaagtttctgcacttttattt |
350 |
Q |
| |
|
|||| |||||| || ||||| | || || ||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23258059 |
taagttttagttcttcttttatggcattggaaataagcttcaataagtcgttatagacagtagtttttatctactttataaagtttctgcacttttattt |
23257960 |
T |
|
| Q |
351 |
tggatttataaggagttgattgcctcaaatgattttttcgggttgacctctattttgatct-------ttctttatattgctgcctta---tatatagtt |
440 |
Q |
| |
|
||||||||| ||||||||||||| |||| ||| ||||| ||| |||||||||||||||||| | |||| |||| || |||| ||||||||| |
|
|
| T |
23257959 |
tggatttatgaggagttgattgcttcaattga-tttttggggatgacctctattttgatctgtgtttaatatttagattgttgtcttatagtatatagtt |
23257861 |
T |
|
| Q |
441 |
atttttctgtctataagatgcaatttttgcataatgaatactaatatagaaagaagacagtagacagctgaaaaaacttcgattaagtataagtttggac |
540 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||| ||| |||| ||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
23257860 |
atttttctttctataagatacaatttttgcataatgaatactgataaagaatgaagacaatagacagctgaaaaaacttcctgaaaacataagtttggat |
23257761 |
T |
|
| Q |
541 |
gaatgatctc |
550 |
Q |
| |
|
|||||||||| |
|
|
| T |
23257760 |
gaatgatctc |
23257751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 55 - 550
Target Start/End: Complemental strand, 23276136 - 23275629
Alignment:
| Q |
55 |
tcttaatgtgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaggcgctatcacctacagttctacaa |
154 |
Q |
| |
|
||||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
23276136 |
tcttactgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcactatcacctacagttctgcag |
23276038 |
T |
|
| Q |
155 |
gctgctttcaatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattgaagtagaatggaat |
254 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
23276037 |
gctgctttcaatgttgatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaatggaaa |
23275938 |
T |
|
| Q |
255 |
taag----nnnnnnnnnnnnatggcaatgaaaatatgttttaacaagccgttatagacaatagtttttatctagtttataaagtttctgcacttttattt |
350 |
Q |
| |
|
|||| |||||| || ||||| | || || ||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23275937 |
taagttttagttcttcttttatggcattggaaataagcttcaataagtcgttatagacagtagtttttatctactttataaagtttctgcacttttattt |
23275838 |
T |
|
| Q |
351 |
tggatttataaggagttgattgcctcaaatgattttttcgggttgacctctattttgatct-------ttctttatattgctgcctta---tatatagtt |
440 |
Q |
| |
|
||||||||| ||||||||||||| |||| ||| ||||| ||| |||||||||||||||||| | |||| |||| || |||| ||||||||| |
|
|
| T |
23275837 |
tggatttatgaggagttgattgcttcaattga-tttttggggatgacctctattttgatctgtgtttaatatttagattgttgtcttatagtatatagtt |
23275739 |
T |
|
| Q |
441 |
atttttctgtctataagatgcaatttttgcataatgaatactaatatagaaagaagacagtagacagctgaaaaaacttcgattaagtataagtttggac |
540 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||| ||| |||| ||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
23275738 |
atttttctttctataagatacaatttttgcataatgaatactgataaagaatgaagacaatagacagctgaaaaaacttcctgaaaacataagtttggat |
23275639 |
T |
|
| Q |
541 |
gaatgatctc |
550 |
Q |
| |
|
|||||||||| |
|
|
| T |
23275638 |
gaatgatctc |
23275629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 56 - 258
Target Start/End: Complemental strand, 27542896 - 27542695
Alignment:
| Q |
56 |
cttaatgtgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaggcgctatcacctacagttctacaag |
155 |
Q |
| |
|
|||| |||| |||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| || | |
|
|
| T |
27542896 |
cttactgtggttatgattgttgttttt-gcagtcctgtatttacacacatggctggaagttcttcggtgtggaaggcgctatcgcctacggttctgcagg |
27542798 |
T |
|
| Q |
156 |
ctgctttcaatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattgaagtagaatggaatt |
255 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
27542797 |
ctgctttcaatgtagatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaatggaaat |
27542698 |
T |
|
| Q |
256 |
aag |
258 |
Q |
| |
|
||| |
|
|
| T |
27542697 |
aag |
27542695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 477
Target Start/End: Complemental strand, 23268572 - 23268275
Alignment:
| Q |
199 |
aaagaggactgccgatgccattttcttccctcctccaaattgaagtagaatggaattaag---nnnnnnnnnnnnatggcaatgaaaatatgttttaaca |
295 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||| ||||||||||||| |||| |||||| || ||||| | |||| | |
|
|
| T |
23268572 |
aaagaggaccgctgatgccattttcttccctcctccaaattaaagtagaatggaaataagtttttagtttttttaatggcattgcaaataagctttacta |
23268473 |
T |
|
| Q |
296 |
agccgttatagacaatagtttt-------tatctagtttataaagtttctgcacttttattttggatttataaggagt----tgattgcctcaaatgatt |
384 |
Q |
| |
|
|||||||||||| ||||||||| | |||| ||||| |||||||| ||||| ||||||||||||| ||| | | |||||||||||| | | | |
|
|
| T |
23268472 |
agccgttatagataatagttttttctttctttctactttattaagtttctacacttctattttggatttaaaagaaattgaatgattgcctcaattta-t |
23268374 |
T |
|
| Q |
385 |
ttttcgggttgacctctattttgatctttc-------tttatattgctgccttatatatagttatttttctgtctataagatgcaatttttgcataatga |
477 |
Q |
| |
|
|||| ||| |||||||| ||||||||| || |||||||||||||||||||||||||||||||||| |||| ||| |||||||||| |||||| |
|
|
| T |
23268373 |
ttttggggatgacctctcttttgatctgtctttaatatttatattgctgccttatatatagttatttttcttcctat-ggatacaatttttgcttaatga |
23268275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 418
Target Start/End: Complemental strand, 27542598 - 27542534
Alignment:
| Q |
354 |
atttataagga-gttgattgcctcaaatgattttttcgggttgacctctattttgatctttcttta |
418 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||| ||| |||||||||||||||||| |||||| |
|
|
| T |
27542598 |
atttataaggaagttgattgcctcaattggtttttg-gggatgacctctattttgatctgtcttta |
27542534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 359
Target Start/End: Complemental strand, 27542632 - 27542603
Alignment:
| Q |
330 |
aaagtttctgcacttttattttggatttat |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27542632 |
aaagtttctgcacttttattttggatttat |
27542603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 63 - 249
Target Start/End: Complemental strand, 8985467 - 8985282
Alignment:
| Q |
63 |
tgattattattgttgtttttcgcagtcctgtatttacacacatggctggaagctcttcggtgtggaaggcgctatcacctacagttctacaagctgcttt |
162 |
Q |
| |
|
||||||| ||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||| || ||||||| |
|
|
| T |
8985467 |
tgattatgatttttgtttttt-cagtcctgtatttacacacatggctggaagttcttcggtgtggaaggccctatcacctagagttctgcagactgcttt |
8985369 |
T |
|
| Q |
163 |
caatgtcgatccagaagttgagaaactcttccgttcaaagaggactgccgatgccattttcttccctcctccaaattgaagtagaat |
249 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8985368 |
caatgtagatccagaagttgagaagctcttccgttcaaagaggactgctgatgccattttcttccctcctccaaattaaagtagaat |
8985282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 295 - 470
Target Start/End: Complemental strand, 8984683 - 8984503
Alignment:
| Q |
295 |
aagccgttatagacaatagtttttatctagtttataaagtttctgca----cttttattttggatttataaggagttgattgcctcaaatgattttttcg |
390 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||||| ||||||||||||||||| | || ||||| | |
|
|
| T |
8984683 |
aagccgttatagacaatagtttttatctactttatgaagtttctggaattttttttattttggatttaaaaggagttgattgcctccattggatttttag |
8984584 |
T |
|
| Q |
391 |
ggttgacctctattttgatctttcttt-ata-ttgctgccttatatatagttatttttctgtctataagatgcaatttttgc |
470 |
Q |
| |
|
|| ||||||||| |||||| | ||||| ||| ||||||||||| | ||||||||||||| | || |||| |||||||||| |
|
|
| T |
8984583 |
ggatgacctcta-tttgatttgtctttaatatttgctgccttagacgtagttatttttcttcccattagatacaatttttgc |
8984503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1012 times since January 2019
Visitors: 1120