View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9482H-LTR4-TNT-insertion-23 (Length: 437)

Name: F9482H-LTR4-TNT-insertion-23
Description: F9482H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9482H-LTR4-TNT-insertion-23
F9482H-LTR4-TNT-insertion-23
[»] chr3 (25 HSPs)
chr3 (8-430)||(11662027-11662450)
chr3 (341-426)||(37990632-37990717)
chr3 (340-426)||(1634307-1634392)
chr3 (349-426)||(22304649-22304726)
chr3 (358-423)||(54017826-54017891)
chr3 (358-423)||(54018208-54018273)
chr3 (358-426)||(41359775-41359843)
chr3 (358-413)||(45395663-45395719)
chr3 (349-423)||(37990978-37991052)
chr3 (349-426)||(32589783-32589860)
chr3 (349-426)||(53117976-53118053)
chr3 (358-426)||(12114572-12114640)
chr3 (358-426)||(22303965-22304033)
chr3 (358-426)||(32462910-32462978)
chr3 (358-426)||(42342100-42342168)
chr3 (358-426)||(43346801-43346869)
chr3 (359-426)||(22303670-22303737)
chr3 (349-411)||(33803253-33803316)
chr3 (359-413)||(39914344-39914399)
chr3 (340-431)||(43978857-43978952)
chr3 (349-423)||(21832346-21832418)
chr3 (358-426)||(15772934-15773002)
chr3 (358-426)||(39934965-39935033)
chr3 (374-426)||(47964544-47964596)
chr3 (386-426)||(39336009-39336048)
[»] chr4 (40 HSPs)
chr4 (325-426)||(54936276-54936376)
chr4 (340-420)||(43174226-43174307)
chr4 (347-426)||(36629317-36629396)
chr4 (340-426)||(36608651-36608737)
chr4 (325-426)||(36572099-36572199)
chr4 (325-426)||(3271867-3271971)
chr4 (358-426)||(25483416-25483484)
chr4 (358-426)||(39792868-39792936)
chr4 (349-430)||(1731646-1731727)
chr4 (337-426)||(18932736-18932825)
chr4 (349-426)||(23817680-23817757)
chr4 (340-413)||(39404110-39404184)
chr4 (358-426)||(50002506-50002574)
chr4 (358-426)||(52884775-52884844)
chr4 (358-426)||(52884967-52885038)
chr4 (358-426)||(54343016-54343084)
chr4 (349-423)||(39404481-39404555)
chr4 (365-426)||(15841383-15841444)
chr4 (340-413)||(16889526-16889600)
chr4 (349-426)||(22027960-22028037)
chr4 (349-426)||(22183263-22183340)
chr4 (365-426)||(34646664-34646725)
chr4 (342-426)||(43827520-43827603)
chr4 (323-384)||(34004558-34004619)
chr4 (385-426)||(34544186-34544227)
chr4 (358-426)||(50630763-50630831)
chr4 (325-424)||(3340889-3340988)
chr4 (351-426)||(32941124-32941199)
chr4 (349-384)||(11702298-11702333)
chr4 (325-384)||(18879928-18879987)
chr4 (349-423)||(20825919-20825993)
chr4 (340-426)||(55933114-55933200)
chr4 (358-423)||(10246002-10246067)
chr4 (349-426)||(41370437-41370514)
chr4 (358-426)||(54108993-54109060)
chr4 (358-426)||(3700437-3700505)
chr4 (349-413)||(22028368-22028433)
chr4 (349-413)||(50459813-50459878)
chr4 (358-426)||(54017603-54017671)
chr4 (358-426)||(54108617-54108685)
[»] chr8 (28 HSPs)
chr8 (325-426)||(9309435-9309535)
chr8 (328-413)||(6876842-6876928)
chr8 (358-426)||(34834956-34835024)
chr8 (351-426)||(30441165-30441240)
chr8 (324-426)||(5915947-5916048)
chr8 (327-402)||(9309085-9309160)
chr8 (340-426)||(40579261-40579347)
chr8 (358-426)||(3669767-3669835)
chr8 (340-424)||(40518153-40518237)
chr8 (358-413)||(45122067-45122123)
chr8 (340-426)||(3038282-3038368)
chr8 (357-426)||(147900-147969)
chr8 (358-422)||(3670144-3670208)
chr8 (358-413)||(1014255-1014311)
chr8 (340-384)||(3037961-3038005)
chr8 (358-413)||(12283964-12284020)
chr8 (358-413)||(37544500-37544556)
chr8 (358-424)||(18371671-18371737)
chr8 (365-426)||(20995433-20995494)
chr8 (349-426)||(41129068-41129145)
chr8 (358-426)||(5420731-5420799)
chr8 (358-426)||(6651574-6651642)
chr8 (349-424)||(8919145-8919220)
chr8 (355-426)||(18372001-18372072)
chr8 (359-426)||(34835289-34835356)
chr8 (359-426)||(34835555-34835622)
chr8 (359-426)||(34835821-34835888)
chr8 (340-411)||(43274627-43274699)
[»] chr7 (25 HSPs)
chr7 (340-426)||(30244350-30244436)
chr7 (358-426)||(7517660-7517728)
chr7 (349-426)||(1085617-1085694)
chr7 (340-426)||(30245157-30245239)
chr7 (340-426)||(30253572-30253654)
chr7 (341-426)||(6054640-6054725)
chr7 (358-423)||(28300578-28300644)
chr7 (340-426)||(23369-23455)
chr7 (340-426)||(34218026-34218112)
chr7 (340-426)||(37533356-37533442)
chr7 (325-423)||(45754798-45754895)
chr7 (349-422)||(8128442-8128515)
chr7 (340-425)||(47129450-47129534)
chr7 (358-426)||(19122811-19122879)
chr7 (327-426)||(22567017-22567117)
chr7 (358-426)||(45433321-45433389)
chr7 (358-426)||(14681590-14681656)
chr7 (349-404)||(30244453-30244509)
chr7 (349-404)||(30253671-30253727)
chr7 (358-413)||(37167873-37167929)
chr7 (357-424)||(45434718-45434785)
chr7 (325-426)||(11845271-11845372)
chr7 (349-404)||(30245256-30245312)
chr7 (358-413)||(37532761-37532817)
chr7 (358-413)||(40094784-40094840)
[»] chr2 (27 HSPs)
chr2 (340-426)||(6421811-6421897)
chr2 (340-426)||(14745659-14745745)
chr2 (340-413)||(42514741-42514815)
chr2 (358-426)||(3672781-3672849)
chr2 (358-426)||(36178615-36178683)
chr2 (340-426)||(5542617-5542703)
chr2 (340-426)||(6421465-6421551)
chr2 (349-423)||(6422193-6422267)
chr2 (349-423)||(7598311-7598385)
chr2 (367-426)||(28254258-28254315)
chr2 (340-426)||(36005872-36005958)
chr2 (340-426)||(37106004-37106090)
chr2 (349-426)||(35580725-35580802)
chr2 (358-422)||(7598685-7598749)
chr2 (358-413)||(6421718-6421774)
chr2 (358-413)||(15511505-15511561)
chr2 (325-406)||(1769991-1770073)
chr2 (324-413)||(3673160-3673250)
chr2 (349-426)||(41283476-41283553)
chr2 (358-426)||(962678-962746)
chr2 (358-426)||(15880343-15880411)
chr2 (349-413)||(31899103-31899168)
chr2 (350-426)||(33731728-33731804)
chr2 (349-413)||(40733974-40734039)
chr2 (359-426)||(36178182-36178249)
chr2 (358-413)||(40679639-40679695)
chr2 (358-413)||(40733609-40733665)
[»] chr6 (25 HSPs)
chr6 (349-426)||(10074364-10074441)
chr6 (349-422)||(12071692-12071765)
chr6 (355-423)||(12085041-12085109)
chr6 (340-426)||(16454987-16455073)
chr6 (358-426)||(3409339-3409407)
chr6 (338-422)||(29518587-29518671)
chr6 (338-422)||(29519004-29519088)
chr6 (338-422)||(32741263-32741347)
chr6 (358-413)||(10073626-10073682)
chr6 (359-413)||(5832038-5832093)
chr6 (349-426)||(2843635-2843712)
chr6 (349-414)||(3409751-3409817)
chr6 (342-426)||(1846828-1846912)
chr6 (358-426)||(16107758-16107826)
chr6 (324-422)||(2378210-2378308)
chr6 (349-423)||(2578444-2578518)
chr6 (340-426)||(16454655-16454741)
chr6 (325-426)||(2377834-2377935)
chr6 (358-423)||(2579882-2579947)
chr6 (349-426)||(10073992-10074069)
chr6 (340-412)||(2579102-2579174)
chr6 (358-426)||(2579502-2579570)
chr6 (358-426)||(3415538-3415608)
chr6 (370-413)||(10902452-10902496)
chr6 (340-384)||(14748334-14748378)
[»] chr5 (20 HSPs)
chr5 (324-426)||(36568544-36568645)
chr5 (340-413)||(624288-624362)
chr5 (340-424)||(42405590-42405672)
chr5 (340-422)||(1028509-1028591)
chr5 (349-430)||(3295346-3295426)
chr5 (338-423)||(623901-623986)
chr5 (349-426)||(6500530-6500607)
chr5 (358-426)||(26074156-26074224)
chr5 (358-426)||(26074692-26074760)
chr5 (340-423)||(15370182-15370265)
chr5 (349-426)||(3295016-3295093)
chr5 (349-426)||(6500902-6500979)
chr5 (336-413)||(36492206-36492283)
chr5 (349-426)||(40296316-40296393)
chr5 (358-426)||(34753035-34753103)
chr5 (358-424)||(26590920-26590986)
chr5 (340-426)||(27502028-27502114)
chr5 (349-426)||(35150086-35150163)
chr5 (358-426)||(18603130-18603198)
chr5 (363-426)||(41170714-41170777)
[»] chr1 (25 HSPs)
chr1 (358-426)||(48588498-48588566)
chr1 (344-426)||(41142452-41142535)
chr1 (349-426)||(14318947-14319024)
chr1 (361-426)||(26661535-26661600)
chr1 (349-424)||(34649520-34649595)
chr1 (340-426)||(3875323-3875409)
chr1 (325-423)||(37555812-37555909)
chr1 (324-426)||(44290434-44290536)
chr1 (340-426)||(44290816-44290903)
chr1 (357-430)||(9955985-9956058)
chr1 (349-426)||(32168699-32168776)
chr1 (358-423)||(37556194-37556259)
chr1 (349-426)||(41759563-41759640)
chr1 (358-426)||(41157071-41157139)
chr1 (352-426)||(24600318-24600392)
chr1 (340-426)||(40082486-40082572)
chr1 (349-426)||(3537600-3537677)
chr1 (359-426)||(24131999-24132063)
chr1 (349-426)||(30630639-30630716)
chr1 (349-406)||(37850601-37850659)
chr1 (357-426)||(39066209-39066278)
chr1 (349-426)||(45493975-45494052)
chr1 (358-426)||(41157455-41157523)
chr1 (386-426)||(17294657-17294696)
chr1 (371-426)||(26661921-26661976)
[»] scaffold0391 (2 HSPs)
scaffold0391 (325-426)||(1083-1184)
scaffold0391 (386-426)||(1730-1769)
[»] scaffold0734 (1 HSPs)
scaffold0734 (358-426)||(5476-5545)
[»] scaffold0702 (2 HSPs)
scaffold0702 (325-426)||(491-592)
scaffold0702 (324-408)||(123-208)
[»] scaffold0078 (1 HSPs)
scaffold0078 (358-426)||(5062-5130)


Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 8 - 430
Target Start/End: Complemental strand, 11662450 - 11662027
Alignment:
Q  8 tcattttatttggtttgttatattataaagacggaaaatgctataaagccagagcgggcatgacaaatctagatgcctaaaacgaaatttgaaatgaggt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11662450 tcattttatttggtttgttatattataaagacggaaaatgctataaagccagagcgggcatgacaaatctagatgcctaaaacgaaatttgaaatgaggt 11662351  T
Q  108 atttaaaaaactaacaactaatttgatacttttataagcctaattagtttt-accatcttaaacaacacnnnnnnnttaatgagtaaattttttagtata 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       ||||||||||||||||||||||||    
T  11662350 atttaaaaaactaacaactaatttgatacttttataagcctaattagtttttaccatcttaaacaacacaaaaaaattaatgagtaaattttttagtata 11662251  T
Q  207 tgatctaaaatattttatagaaataaaactaatattatcagttaagtaatagatttgtggcctaaagaaatgtgaggctagacgatcatctcacttatca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11662250 tgatctaaaatattttatagaaataaaactaatattatcagttaagtaatagatttgtggcctaaagaaatgtgaggctagacgatcatctcacttatca 11662151  T
Q  307 ccgcacttggaccgtccttgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaatgagagagacacctcactctta 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11662150 ccgcacttggaccgtccttgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaatgagagagacacctcactctta 11662051  T
Q  407 cccaaaaaccttaaggcaattggt 430  Q
    ||||||||||||||||||||||||    
T  11662050 cccaaaaaccttaaggcaattggt 11662027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 341 - 426
Target Start/End: Original strand, 37990632 - 37990717
Alignment:
Q  341 gagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||| ||||| || ||||||||||||||||||| |||||||   ||||||||||| ||||||||||| ||||||||||||||||    
T  37990632 gagctcgggggaccgtccacatcgaggctagaacaatcacacaagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 37990717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 1634307 - 1634392
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaatgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||| | ||||| || |||||||||||||||||||||| | | ||||||||| ||| ||||||||||| ||||||||||| ||||    
T  1634307 ggagctagggggaccgtccacatcgaggctagaacaaccatatagtgagagagataccgcactcttaccc-aaaaccttaagccaat 1634392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 22304726 - 22304649
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| ||||||||| ||||||||||| |||||   ||||||||||| ||||||||||| ||||||||||||||||    
T  22304726 gggactgtccacatcgagactagaacaaccgcacaagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 22304649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 358 - 423
Target Start/End: Original strand, 54017826 - 54017891
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggc 423  Q
    |||||||| |||||||||||||||||| | ||||||||||| ||||||||||| |||||||||||||    
T  54017826 cacatcgaagctagaacaaccacacaagtaagagagacaccacactcttaccc-aaaaccttaaggc 54017891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 358 - 423
Target Start/End: Original strand, 54018208 - 54018273
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggc 423  Q
    |||||||||||||||||||||||||||  | |||||||||| ||||||||||| |||||||||||||    
T  54018208 cacatcgaggctagaacaaccacacaagcatgagagacaccacactcttaccc-aaaaccttaaggc 54018273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 41359775 - 41359843
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||||||||||||||||||  ||||||||| || || |||||||| ||||||||||||||||    
T  41359775 cacatcgaggctagaacaaccacacaagcgagagagacgccacattcttaccc-aaaaccttaaggcaat 41359843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 45395663 - 45395719
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaa 413  Q
    ||||||||||||||| ||||| ||||| ||||||||||||| |||||||||||||||    
T  45395663 cacatcgaggctagagcaaccccacaagtgagagagacaccacactcttacccaaaa 45395719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 423
Target Start/End: Original strand, 37990978 - 37991052
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggc 423  Q
    ||||| || |||||||||||||||||||||||| ||   ||||||||||| ||||||||||| |||||||||||||    
T  37990978 gggaccgtccacatcgaggctagaacaaccacataagcaagagagacaccacactcttaccc-aaaaccttaaggc 37991052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 32589860 - 32589783
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || ||||||||| |||||||||||||||||   ||||||||| | ||||||||||| ||||||||||||||||    
T  32589860 gggaccgtccacatcgagcctagaacaaccacacaagcaagagagacatcgcactcttaccc-aaaaccttaaggcaat 32589783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 53117976 - 53118053
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacac-aatgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| ||||||||||| ||||||||||||||||   ||||||||||||  ||||||||||| |||| |||||||||||    
T  53117976 gggaccgttcacatcgatgctagaacaaccacacttgtgagagagacactacactcttaccc-aaaatcttaaggcaat 53118053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 12114572 - 12114640
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||| ||||||||||||| ||||| | ||||||||||| ||||||||||| ||||||||||| ||||    
T  12114572 cacatcgtggctagaacaaccgcacaagtaagagagacaccacactcttaccc-aaaaccttaagacaat 12114640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 22303965 - 22304033
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||||||||||| |||   ||||||||||| |||||||| || ||||||||||||||||    
T  22303965 cacatcgaggctagaacaaccactcaagcaagagagacaccacactcttatcc-aaaaccttaaggcaat 22304033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 32462910 - 32462978
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||||||||| |||||   ||||||||||| ||||||||| | ||||||||||||||||    
T  32462910 cacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttactc-aaaaccttaaggcaat 32462978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 42342100 - 42342168
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||||||||| |||||   |||||||| || ||||||||||| ||||||||||||||||    
T  42342100 cacatcgaggctagaacaaccgcacaagcaagagagacgccacactcttaccc-aaaaccttaaggcaat 42342168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 43346801 - 43346869
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| ||||||||||||||| |||||  | |||||||||| ||||||||||| ||||||||||||||||    
T  43346801 cacatagaggctagaacaaccgcacaagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 43346869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 426
Target Start/End: Original strand, 22303670 - 22303737
Alignment:
Q  359 acatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||||||||| | ||||| | ||||| ||||| ||||||||||| ||||||||||||||||    
T  22303670 acatcgaggctagaacaatcgcacaagtaagagaaacaccacactcttaccc-aaaaccttaaggcaat 22303737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 411
Target Start/End: Original strand, 33803253 - 33803316
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaa 411  Q
    ||||| || |||||||||||||||||||||||||||  ||| ||||| || |||||||||||||    
T  33803253 gggaccgtccacatcgaggctagaacaaccacacaagagagggagacgccacactcttacccaa 33803316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 413
Target Start/End: Complemental strand, 39914399 - 39914344
Alignment:
Q  359 acatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaa 413  Q
    |||||||||||||||||||| || || ||||||||||||| |||||||| ||||||    
T  39914399 acatcgaggctagaacaaccgcataagtgagagagacaccacactcttatccaaaa 39914344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 431
Target Start/End: Original strand, 43978857 - 43978952
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactct----tacccaaaaaccttaaggcaattggta 431  Q
    |||||||| ||||| || |||||||||| |||||||| ||||||| |||||||||| || ||||||    ||||||||| |||||||||||| ||||    
T  43978857 ggagctcgggggacagtccacatcgaggttagaacaaacacacaagtgagagagacgccacactctagcttacccaaaa-ccttaaggcaataggta 43978952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 423
Target Start/End: Original strand, 21832346 - 21832418
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaatgagagagacacctcactcttacccaaaaaccttaaggc 423  Q
    |||||||| |||||||||||||||||||||| |||| |  ||||| ||  ||||||||||| |||||||||||||    
T  21832346 gggactgtccacatcgaggctagaacaaccagacaa-gcaagagagacgccactcttaccc-aaaaccttaaggc 21832418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 15773002 - 15772934
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||| ||||||||||||||||   ||||||||||| |||||||| || |||||||||| |||||    
T  15773002 cacatcgaggttagaacaaccacacaagcaagagagacaccacactcttatcc-aaaaccttaaagcaat 15772934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 39934965 - 39935033
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||||||||||||||||||   ||||||||| | ||||||||| | ||||| ||||||||||    
T  39934965 cacatcgaggctagaacaaccacacaagcaagagagacatcacactcttactc-aaaactttaaggcaat 39935033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 426
Target Start/End: Original strand, 47964544 - 47964596
Alignment:
Q  374 caaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||| |||||||||| || ||||||||||| ||||||||||||||||    
T  47964544 caaccacacaagtgagagagacgccacactcttaccc-aaaaccttaaggcaat 47964596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 426
Target Start/End: Original strand, 39336009 - 39336048
Alignment:
Q  386 gagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  39336009 gagagagacaccacactcttaccc-aaaaccttaaggcaat 39336048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 325 - 426
Target Start/End: Complemental strand, 54936376 - 54936276
Alignment:
Q  325 tgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaatgagagagacacctcactcttacccaaaaaccttaaggca 424  Q
    |||||||||  ||| |||||||| |||||||| |||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||||||    
T  54936376 tgttgggtcactgggggagctcgggggactgtccacatcgaggctagaacaaccacatagtgagagagacaccacactcttaccc-aaaaccttaaggca 54936278  T
Q  425 at 426  Q
    ||    
T  54936277 at 54936276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 340 - 420
Target Start/End: Complemental strand, 43174307 - 43174226
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaa 420  Q
    |||||||| ||||| || |||||| ||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  43174307 ggagctcgggggaccgtccacatcaaggcttgaacaaccacacaagtgagagagacaccacactcttacccaaaagccttaa 43174226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 426
Target Start/End: Complemental strand, 36629396 - 36629317
Alignment:
Q  347 gtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||| || |||||||||||||||||||||||||||   ||||||||||| ||||||||||| ||||||||||||||||    
T  36629396 gtgggaccgtccacatcgaggctagaacaaccacacaagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 36629317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 36608651 - 36608737
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacac-aatgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||| | ||||| || ||||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||| ||||    
T  36608651 ggagcttgggggaccgtccacatcgaggctagaacaaccacactagtgagagagacaccacactcttaccc-aaaaccttaagacaat 36608737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 426
Target Start/End: Complemental strand, 36572199 - 36572099
Alignment:
Q  325 tgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggc 423  Q
    |||||||||| ||||||| |||| ||||| ||||||||||||||| |||||||| |||||  ||||||||||||  ||||| |||| |||||||||||||    
T  36572199 tgttgggtcgctggaggatctcg-gggaccgttcacatcgaggcttgaacaaccgcacaagcgagagagacaccatactctaaccc-aaaaccttaaggc 36572102  T
Q  424 aat 426  Q
    |||    
T  36572101 aat 36572099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 426
Target Start/End: Complemental strand, 3271971 - 3271867
Alignment:
Q  325 tgttgggtcgttggaggagctcgtggg-actgttcacatcgaggctagaacaaccacacaat----gagagagacacctcactcttacccaaaaacctta 419  Q
    ||||||||| |||| |||||||| ||| ||||| |||||||||||||||||||||||| |||    |||||||||| | ||||||||||| |||||||||    
T  3271971 tgttgggtcattgggggagctcggggggactgtccacatcgaggctagaacaaccacataataaacgagagagaca-cacactcttaccc-aaaacctta 3271874  T
Q  420 aggcaat 426  Q
    |||||||    
T  3271873 aggcaat 3271867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 25483484 - 25483416
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||||||||||||||||||   ||||||||||| ||||||||||| ||||||||||||||||    
T  25483484 cacatcgaggctagaacaaccacacaagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 25483416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 39792868 - 39792936
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||||||||||||||||||   ||||||||||| ||||||||||| ||||||||||||||||    
T  39792868 cacatcgaggctagaacaaccacacaagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 39792936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 430
Target Start/End: Original strand, 1731646 - 1731727
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaattggt 430  Q
    ||||| || ||||| |||||||||||||||||||||   ||||| ||||| ||||||||||| ||||||||||||||||||||    
T  1731646 gggaccgtccacattgaggctagaacaaccacacaagcaagagaaacaccacactcttaccc-aaaaccttaaggcaattggt 1731727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 426
Target Start/End: Original strand, 18932736 - 18932825
Alignment:
Q  337 ggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||| |||||| ||||| || ||||||||||||| ||||||||| ||| | ||||||||||| |||||||| || ||||||||||||||||    
T  18932736 ggagaagctcgggggaccgtacacatcgaggctataacaaccactcaagtaagagagacaccacactctta-cctaaaaccttaaggcaat 18932825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 23817680 - 23817757
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacac-aatgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || ||||||||||||||||||||||||| |   ||||||||||| ||||||||||| ||||||||||||||||    
T  23817680 gggaccgtccacatcgaggctagaacaaccacactagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 23817757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 39404184 - 39404110
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaa 413  Q
    |||||||| ||||| || |||||||||||||||||||||||||||   |||||||| || |||||||||||||||    
T  39404184 ggagctcgggggaccgtccacatcgaggctagaacaaccacacaagcaagagagacgccacactcttacccaaaa 39404110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 50002574 - 50002506
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||||||||| ||||| | ||||||||||| ||||||||||| ||||||||||| ||||    
T  50002574 cacatcgaggctagaacaaccgcacaagtaagagagacaccacactcttaccc-aaaaccttaagacaat 50002506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 52884844 - 52884775
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||| ||||| |||||  | |||||||||| ||||||||||| ||||||||||||||||    
T  52884844 cacatcgaggctagatcaaccgcacaagcaagagagacaccacactcttaccccaaaaccttaaggcaat 52884775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 52885038 - 52884967
Alignment:
Q  358 cacatcgaggctagaacaaccacacaat---gagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||| |||||||||||    |||||||||||| || |||||||| ||||||||||||||||    
T  52885038 cacatcgaggctagatcaaccacacaaataagagagagacaccacattcttaccccaaaaccttaaggcaat 52884967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 54343016 - 54343084
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||||||||||| |||   ||||||||||| ||||||||||| ||||||||||||||||    
T  54343016 cacatcgaggctagaacaaccactcaagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 54343084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 423
Target Start/End: Complemental strand, 39404555 - 39404481
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggc 423  Q
    ||||| ||||||||||||||||||||||||||||||   ||||||||||| || |||| ||| |||||||||||||    
T  39404555 gggaccgttcacatcgaggctagaacaaccacacaagcaagagagacaccacattcttgccc-aaaaccttaaggc 39404481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 426
Target Start/End: Original strand, 15841383 - 15841444
Alignment:
Q  365 aggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| ||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||    
T  15841383 aggctagagcaaccacacaagtgagagagacatcacactcttaccc-aaaaccttaaggcaat 15841444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 16889526 - 16889600
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaa 413  Q
    |||||||| ||||| || |||||||||| |||||||| ||||||| || ||||||||||  ||||||||||||||    
T  16889526 ggagctcgagggaccgtccacatcgaggttagaacaatcacacaaggaagagagacaccatactcttacccaaaa 16889600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 22027960 - 22028037
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaat-gagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| ||||||||| ||| |||||||||| ||  |||||||||||| || |||||||| ||||||||||||||||    
T  22027960 gggactgtccacatcgagactaaaacaaccacataagcgagagagacaccacattcttaccc-aaaaccttaaggcaat 22028037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 22183263 - 22183340
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || |||||||||||||||||||||  |||| |||||||||| || |||||||| || ||||||||||||||||    
T  22183263 gggaccgtccacatcgaggctagaacaaccgtacaagtgagagagacgccacactcttatcc-aaaaccttaaggcaat 22183340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 426
Target Start/End: Original strand, 34646664 - 34646725
Alignment:
Q  365 aggctagaacaaccacaca-atgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||||||| |  ||||||||||| ||||||||||| ||||||||||||||||    
T  34646664 aggctagaacaaccacacagaccagagagacaccacactcttaccc-aaaaccttaaggcaat 34646725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 426
Target Start/End: Complemental strand, 43827603 - 43827520
Alignment:
Q  342 agctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||| ||||| || |||||||||| |||||||||| ||||| | ||||||||||| |||||||| ||  |||||||||||||||    
T  43827603 agctcgggggaccgtccacatcgaggttagaacaaccgcacaagtaagagagacaccacactcttatcc--aaaccttaaggcaat 43827520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 384
Target Start/End: Original strand, 34004558 - 34004619
Alignment:
Q  323 cttgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaa 384  Q
    ||||||||||| |  |||||||||| | ||| |||||||||||||||||||||||| |||||    
T  34004558 cttgttgggtcatgagaggagctcgggagaccgttcacatcgaggctagaacaaccgcacaa 34004619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 385 - 426
Target Start/End: Complemental strand, 34544227 - 34544186
Alignment:
Q  385 tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||| ||| ||||||||||||||||||||||||||||    
T  34544227 tgagagagataccacactcttacccaaaaaccttaaggcaat 34544186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 50630763 - 50630831
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||| ||||||| |||||  | |||||||||| ||||||||||| ||||||||||||||||    
T  50630763 cacatcgaggctaaaacaaccgcacaagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 50630831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 424
Target Start/End: Complemental strand, 3340988 - 3340889
Alignment:
Q  325 tgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggc 423  Q
    |||||||||  ||| |||||||  | ||| || ||||||||||||||||||||| |||||   ||| ||||||| ||||||||||| |||||||||||||    
T  3340988 tgttgggtcactgggggagctcaggagaccgtccacatcgaggctagaacaaccccacaagcaagaaagacaccacactcttaccc-aaaaccttaaggc 3340890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 426
Target Start/End: Original strand, 32941124 - 32941199
Alignment:
Q  351 gactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||| ||||||||||||||||||||| |||||   ||||||||  | ||||||||||| ||||||||||||||||    
T  32941124 gactgtccacatcgaggctagaacaaccgcacaagcaagagagacgtcacactcttaccc-aaaaccttaaggcaat 32941199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 384
Target Start/End: Original strand, 11702298 - 11702333
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa 384  Q
    |||||||||||||||||||||||||||||| |||||    
T  11702298 gggactgttcacatcgaggctagaacaaccgcacaa 11702333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 384
Target Start/End: Complemental strand, 18879987 - 18879928
Alignment:
Q  325 tgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaa 384  Q
    ||||||||| |||| ||||||||  |||| || |||||||| ||||||||||||||||||    
T  18879987 tgttgggtcattgggggagctcggaggaccgtccacatcgaagctagaacaaccacacaa 18879928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 423
Target Start/End: Complemental strand, 20825993 - 20825919
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaatg-agagagacacctcactcttacccaaaaaccttaaggc 423  Q
    |||||||| |||||| |||||||||||||| || || | ||||| ||||| ||||||||||| |||||||||||||    
T  20825993 gggactgtccacatcaaggctagaacaaccgcataaggaagagaaacaccacactcttaccc-aaaaccttaaggc 20825919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 55933114 - 55933200
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||| | ||||| || ||||||||||||||||||||   |||| | ||||||||||| ||||||||||| ||||| ||||||||||    
T  55933114 ggagcttgggggaccgtccacatcgaggctagaacaactgtacaagtaagagagacaccacactcttaccc-aaaactttaaggcaat 55933200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 423
Target Start/End: Complemental strand, 10246067 - 10246002
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggc 423  Q
    |||||||||||||||||||||| ||||   || |||||||| ||||||||||| |||||||||||||    
T  10246067 cacatcgaggctagaacaaccagacaagcaagggagacaccacactcttaccc-aaaaccttaaggc 10246002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 41370514 - 41370437
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || ||||||||||||||||||||||| |||   ||||||||||  ||||||||||| ||||| ||||||||||    
T  41370514 gggaccgtccacatcgaggctagaacaaccactcaagcaagagagacactacactcttaccc-aaaactttaaggcaat 41370437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 54109060 - 54108993
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| |||||||||||| |||||  | |||||||||| |||||||||||||||  |||||||||||    
T  54109060 cacatcgaagctagaacaaccgcacaagcaagagagacaccacactcttacccaaaa--cttaaggcaat 54108993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 3700505 - 3700437
Alignment:
Q  358 cacatcgaggctagaacaaccacac-aatgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||| ||| |||||||| ||||||||||||| |  ||||||| || ||||||||||||||||    
T  3700505 cacatcgaggcttgaataaccacacaaatgagagagacatcatactcttatcc-aaaaccttaaggcaat 3700437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 413
Target Start/End: Original strand, 22028368 - 22028433
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaa 413  Q
    ||||| || ||||| ||||||||||||||| |||||  | |||||||||| |||||||||||||||    
T  22028368 gggaccgtccacattgaggctagaacaacctcacaagcaagagagacaccacactcttacccaaaa 22028433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 413
Target Start/End: Complemental strand, 50459878 - 50459813
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaa 413  Q
    ||||| || |||||||||||||||||||||||||||   ||||||||||| | |||||||| ||||    
T  50459878 gggaccgtgcacatcgaggctagaacaaccacacaagcaagagagacaccacgctcttacctaaaa 50459813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 54017603 - 54017671
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||||||||||||||| ||   ||||||||| | |||||||| || ||||||||||||||||    
T  54017603 cacatcgaggctagaacaaccacataagcaagagagacatcacactctta-cctaaaaccttaaggcaat 54017671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 54108685 - 54108617
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| |||||||||||||||||||||   ||| ||||||| |||||||| || ||||||||||||||||    
T  54108685 cacattgaggctagaacaaccacacaagcaagatagacaccacactcttagcc-aaaaccttaaggcaat 54108617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 426
Target Start/End: Complemental strand, 9309535 - 9309435
Alignment:
Q  325 tgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaatgagagagacacctcactcttacccaaaaaccttaaggca 424  Q
    |||||||||  ||| |||||||| ||||| || |||||||||||||||||||||||| | ||||||||||||| |||||||||||  | |||||||||||    
T  9309535 tgttgggtcactgggggagctcgggggaccgtccacatcgaggctagaacaaccacatactgagagagacaccacactcttaccc-gacaccttaaggca 9309437  T
Q  425 at 426  Q
    ||    
T  9309436 at 9309435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 328 - 413
Target Start/End: Original strand, 6876842 - 6876928
Alignment:
Q  328 tgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacac-aatgagagagacacctcactcttacccaaaa 413  Q
    |||||| |||| |||||||| ||||| || ||||||||||||||||||||||||| ||  ||||| ||||| |||||||||||||||    
T  6876842 tgggtcattgggggagctcgggggaccgtccacatcgaggctagaacaaccacacaaacaagagaaacaccacactcttacccaaaa 6876928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 34835024 - 34834956
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||||||||||||||||||   ||||||||||| ||||||||||| ||||||||||||||||    
T  34835024 cacatcgaggctagaacaaccacacaagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 34834956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 351 - 426
Target Start/End: Complemental strand, 30441240 - 30441165
Alignment:
Q  351 gactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||| ||||||||||||||||||||| |||||   ||||||||||| ||||||||||| ||||||||||||||||    
T  30441240 gactgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 30441165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 426
Target Start/End: Complemental strand, 5916048 - 5915947
Alignment:
Q  324 ttgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaagg 422  Q
    ||||||| || |||| |||| ||| ||||| || ||||||||||||||||||||| |||||   ||||||||||| ||||||||||| ||||||||||||    
T  5916048 ttgttggatcattgggggagttcg-gggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttaccc-aaaaccttaagg 5915951  T
Q  423 caat 426  Q
    ||||    
T  5915950 caat 5915947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 402
Target Start/End: Complemental strand, 9309160 - 9309085
Alignment:
Q  327 ttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaatgagagagacacctcact 402  Q
    |||||||  ||| |||||||| ||||| || |||||||||||||||||||||||| | ||||||||||||| ||||    
T  9309160 ttgggtcactgggggagctcgggggaccgtccacatcgaggctagaacaaccacatagtgagagagacaccacact 9309085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 40579261 - 40579347
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| ||||| || ||||||||||||||||||||| |||||   ||||||||||| ||||||||||||||| || |||||||||    
T  40579261 ggagctcgggggacagtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttacccaaaatcc-taaggcaat 40579347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 3669835 - 3669767
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||||||||| |||||  | |||||||||| ||||||||||| ||||||||||||||||    
T  3669835 cacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 3669767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 424
Target Start/End: Complemental strand, 40518237 - 40518153
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggca 424  Q
    |||||||| ||||| || |||||| ||||||||||||||||||||   |||||||| || ||||||||||| ||||||||||||||    
T  40518237 ggagctcgggggaccgtccacatcaaggctagaacaaccacacaagcaagagagacgccacactcttaccc-aaaaccttaaggca 40518153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 45122067 - 45122123
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaa 413  Q
    ||||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||    
T  45122067 cacatcgaggctagaacaaccccacaagtaagagagacaccacactcttacccaaaa 45122123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 3038282 - 3038368
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||  |||| || |||||||||||||||||||||||||||   |||||||  || ||||||||||| ||||||||||||||||    
T  3038282 ggagctcggaggaccgtccacatcgaggctagaacaaccacacaagcaagagagatgccacactcttaccc-aaaaccttaaggcaat 3038368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 426
Target Start/End: Complemental strand, 147969 - 147900
Alignment:
Q  357 tcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||| ||||||||||||||  ||||| | ||||||||||| ||||||||||| ||||||||||||||||    
T  147969 tcacattgaggctagaacaactgcacaagtaagagagacaccacactcttaccc-aaaaccttaaggcaat 147900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 422
Target Start/End: Complemental strand, 3670208 - 3670144
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaagg 422  Q
    ||||||||||||||||||||| |||||  | |||||||||| ||||||||||| ||||||||||||    
T  3670208 cacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttaccc-aaaaccttaagg 3670144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 1014255 - 1014311
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaa 413  Q
    ||||||||||||||||||||| |||||  | |||||||||| |||||||||||||||    
T  1014255 cacatcgaggctagaacaaccgcacaagcaggagagacaccacactcttacccaaaa 1014311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 3037961 - 3038005
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa 384  Q
    |||||||| ||||| || |||||||||||||||||||||||||||    
T  3037961 ggagctcgggggaccgtccacatcgaggctagaacaaccacacaa 3038005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 413
Target Start/End: Complemental strand, 12284020 - 12283964
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaa 413  Q
    ||||| ||||||||||||||||||||| ||||||||||||  |||||||| ||||||    
T  12284020 cacatagaggctagaacaaccacacaagtgagagagacactacactcttatccaaaa 12283964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 37544500 - 37544556
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaa 413  Q
    ||||||||||||||||||||| ||||| | ||| ||||||| |||||||||||||||    
T  37544500 cacatcgaggctagaacaaccgcacaagtaagaaagacaccacactcttacccaaaa 37544556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 424
Target Start/End: Original strand, 18371671 - 18371737
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggca 424  Q
    |||||||| |||||| ||||| ||||| ||||||| ||||| ||||||||||| ||||||||||||||    
T  18371671 cacatcgaagctagagcaaccgcacaaatgagagacacaccacactcttaccc-aaaaccttaaggca 18371737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 426
Target Start/End: Original strand, 20995433 - 20995494
Alignment:
Q  365 aggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||| ||| ||||||||||| ||||||||||||| || |||||||| ||||||||||||||||    
T  20995433 aggccagagcaaccacacaagtgagagagacaccacattcttaccc-aaaaccttaaggcaat 20995494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 41129145 - 41129068
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || |||||||||| | |||||||||||||| | ||||||||||| ||||| ||||| ||||||||||| ||||    
T  41129145 gggaccgtccacatcgaggtttgaacaaccacacaagtaagagagacaccacactcataccc-aaaaccttaagacaat 41129068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 5420799 - 5420731
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||| |||||||||||||| |||| |||||  | |||||||| | |||||||||||||||||    
T  5420799 cacatcgaggcttgaacaaccacacaagtgagggagacgtcacactctta-caaaaaaccttaaggcaat 5420731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 6651642 - 6651574
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||| |||||||| | |||||  | |||||||||| ||||||||||| ||||||||||||||||    
T  6651642 cacatcgaggttagaacaatcgcacaagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 6651574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 424
Target Start/End: Original strand, 8919145 - 8919220
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggca 424  Q
    ||||| || |||||||| ||||||||||||||||||   | ||||||||| |||||||| || ||||||||||||||    
T  8919145 gggaccgtccacatcgaagctagaacaaccacacaagcaaaagagacaccacactcttatcc-aaaaccttaaggca 8919220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 426
Target Start/End: Original strand, 18372001 - 18372072
Alignment:
Q  355 gttcacatcgaggctagaacaaccacacaat-gagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| ||||||||| ||||| |||||  |||||| ||||| ||||||||||| |||||||||| |||||    
T  18372001 gttcacattgaggctagagcaaccgcacaagcgagagaaacaccacactcttaccc-aaaaccttaaagcaat 18372072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 426
Target Start/End: Complemental strand, 34835356 - 34835289
Alignment:
Q  359 acatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||| ||||||||||   |||| |||||| ||||||||||| ||||| ||||||||||    
T  34835356 acatcgaggctagaataaccacacaagcaagagtgacaccacactcttaccc-aaaactttaaggcaat 34835289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 426
Target Start/End: Complemental strand, 34835622 - 34835555
Alignment:
Q  359 acatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||| ||||||||||   |||| |||||| ||||||||||| ||||| ||||||||||    
T  34835622 acatcgaggctagaataaccacacaagcaagagtgacaccacactcttaccc-aaaactttaaggcaat 34835555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 426
Target Start/End: Complemental strand, 34835888 - 34835821
Alignment:
Q  359 acatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||| ||||||||||   |||| |||||| ||||||||||| ||||| ||||||||||    
T  34835888 acatcgaggctagaataaccacacaagcaagagtgacaccacactcttaccc-aaaactttaaggcaat 34835821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 411
Target Start/End: Original strand, 43274627 - 43274699
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaa 411  Q
    |||||||| ||||| || |||||||||||| |||||||| || || | ||||||||||| ||||| |||||||    
T  43274627 ggagctcgggggaccgtccacatcgaggctggaacaaccccataagtaagagagacaccacactcatacccaa 43274699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 340 - 426
Target Start/End: Complemental strand, 30244436 - 30244350
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| |||||  | |||||||||||| |||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||    
T  30244436 ggagctcgggggaccatccacatcgaggcttgaacaaccacacaagtgagagagacaccacactcttaccc-aaaaccttaaggcaat 30244350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 7517728 - 7517660
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||||||||    
T  7517728 cacatcgaggctagaacaaccacacaagtgagacagacaccacactcttaccc-aaaaccttaaggcaat 7517660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 1085617 - 1085694
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || ||||||||||||||||||||||||||| | |||||||| || ||||||||||| ||||||||||||||||    
T  1085617 gggaccgtccacatcgaggctagaacaaccacacaagtaagagagacgccacactcttaccc-aaaaccttaaggcaat 1085694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 426
Target Start/End: Complemental strand, 30245239 - 30245157
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaatgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| |||||  | |||||||||||| |||||||||||||   ||||||||||| ||||||||||| ||||||||||||||||    
T  30245239 ggagctcgggggaccatccacatcgaggcttgaacaaccacaca---agagagacaccacactcttaccc-aaaaccttaaggcaat 30245157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 426
Target Start/End: Complemental strand, 30253654 - 30253572
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaatgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| |||||  | |||||||||||| |||||||||||||   ||||||||||| ||||||||||| ||||||||||||||||    
T  30253654 ggagctcgggggaccatccacatcgaggcttgaacaaccacaca---agagagacaccacactcttaccc-aaaaccttaaggcaat 30253572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 341 - 426
Target Start/End: Complemental strand, 6054725 - 6054640
Alignment:
Q  341 gagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||| ||||| || |||||| ||||||||||||||| |||| |  |||||||||| ||||||||||| ||||||||||||||||    
T  6054725 gagctcgggggaccgtccacatcaaggctagaacaaccatacaagtaggagagacaccacactcttaccc-aaaaccttaaggcaat 6054640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 358 - 423
Target Start/End: Original strand, 28300578 - 28300644
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggc 423  Q
    |||||||||||||||| ||||||||||  | |||||||||| ||||||||||| |||||||||||||    
T  28300578 cacatcgaggctagaataaccacacaagcaagagagacaccacactcttaccccaaaaccttaaggc 28300644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 23369 - 23455
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaatg--agagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| ||||| || || |||||||||||||||||| ||| |||  ||||||||||| ||||||||||| ||||||||||||||||    
T  23369 ggagctcgggggaccgtccaaatcgaggctagaacaaccgcac-atgcaagagagacaccacactcttaccc-aaaaccttaaggcaat 23455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 34218026 - 34218112
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaat-gagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||  |||| || |||||||||||| ||||||||| ||||  |||||||||||| ||||||||||| ||||||||||| ||||    
T  34218026 ggagctcggaggaccgtccacatcgaggcttgaacaaccatacaagcgagagagacaccacactcttaccc-aaaaccttaagacaat 34218112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 37533356 - 37533442
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || ||||| || ||||||||||||||||||||| |||||   | ||||||||| ||||||||||| ||||||||||||||||    
T  37533356 ggagcgcgggggaccgtccacatcgaggctagaacaaccgcacaagcaaaagagacaccacactcttaccc-aaaaccttaaggcaat 37533442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 423
Target Start/End: Complemental strand, 45754895 - 45754798
Alignment:
Q  325 tgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggc 423  Q
    ||||||||| |||| |||||||| | ||| | | ||||||||||| ||||||||||||||  | |||||||||| ||||||||||| |||||||||||||    
T  45754895 tgttgggtcattgggggagctcgagtgaccgct-acatcgaggcttgaacaaccacacaagcaagagagacaccacactcttaccc-aaaaccttaaggc 45754798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 8128442 - 8128515
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaagg 422  Q
    ||||||||||||||||| ||||||||||||||| ||  ||||| |||||| |||||||| || ||||||||||||    
T  8128442 gggactgttcacatcgatgctagaacaaccacataagcgagagtgacaccacactcttaacc-aaaaccttaagg 8128515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 425
Target Start/End: Complemental strand, 47129534 - 47129450
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggcaa 425  Q
    |||||||| ||||| || ||||||||||||||| ||||| |||||  | |||||||||| ||||||||||| |||||||||||||||    
T  47129534 ggagctcg-gggaccgtccacatcgaggctagatcaaccgcacaagcaagagagacaccacactcttaccc-aaaaccttaaggcaa 47129450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 19122879 - 19122811
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||| |||||||||||||||||   ||| ||||||| ||||||||||| ||||||||||||||||    
T  19122879 cacatcgagactagaacaaccacacaagcaagatagacaccacactcttaccc-aaaaccttaaggcaat 19122811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 426
Target Start/End: Original strand, 22567017 - 22567117
Alignment:
Q  327 ttgggtcgttg-gaggagctcgtgggactgttcacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggca 424  Q
    ||||||||||| | |||||||| |||||  | |||||||||||  |||||||| |||||  | |||||||||| |||||||| |||||||||||||||||    
T  22567017 ttgggtcgttgaggggagctcgggggaccatccacatcgaggcccgaacaaccccacaagcaagagagacaccacactctta-ccaaaaaccttaaggca 22567115  T
Q  425 at 426  Q
    ||    
T  22567116 at 22567117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 45433389 - 45433321
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||||||||| |||||  | |||||||||| ||||||||||| |||| |||||||||||    
T  45433389 cacatcgaggctagaacaaccccacaagcaagagagacaccacactcttaccc-aaaatcttaaggcaat 45433321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 14681656 - 14681590
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||| ||||||||||||||||||  || |||||||||| ||||||||||| ||||||||||| ||||    
T  14681656 cacatcaaggctagaacaaccacact-tgtgagagacaccacactcttaccc-aaaaccttaagacaat 14681590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 404
Target Start/End: Complemental strand, 30244509 - 30244453
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactct 404  Q
    ||||| || |||||||||||| |||||||||||||| ||||||||||||| ||||||    
T  30244509 gggaccgtccacatcgaggcttgaacaaccacacaagtgagagagacaccacactct 30244453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 404
Target Start/End: Complemental strand, 30253727 - 30253671
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactct 404  Q
    ||||| || |||||||||||| |||||||||||||| ||||||||||||| ||||||    
T  30253727 gggacagtccacatcgaggcttgaacaaccacacaagtgagagagacaccacactct 30253671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 413
Target Start/End: Complemental strand, 37167929 - 37167873
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaa 413  Q
    ||||||||||||||||||||| |||||  | |||||||||| |||||||||||||||    
T  37167929 cacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttacccaaaa 37167873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 424
Target Start/End: Complemental strand, 45434785 - 45434718
Alignment:
Q  357 tcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggca 424  Q
    |||||||||||||||||||||  ||||| | ||||||||| | ||||||||||| ||||||||||||||    
T  45434785 tcacatcgaggctagaacaactccacaagtaagagagacatcacactcttaccc-aaaaccttaaggca 45434718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 426
Target Start/End: Complemental strand, 11845372 - 11845271
Alignment:
Q  325 tgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggc 423  Q
    |||||||||  ||| ||||| || ||||| ||  |||||||||||||||||||  |||||   ||||||||||| |||||||| || |||||||||||||    
T  11845372 tgttgggtcactgggggagcacgggggaccgtctacatcgaggctagaacaactgcacaagcaagagagacaccacactcttatcc-aaaaccttaaggc 11845274  T
Q  424 aat 426  Q
    |||    
T  11845273 aat 11845271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 404
Target Start/End: Complemental strand, 30245312 - 30245256
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactct 404  Q
    ||||| || ||||| |||||| |||||||||||||| ||||||||||||| ||||||    
T  30245312 gggaccgtccacattgaggcttgaacaaccacacaagtgagagagacaccacactct 30245256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 37532761 - 37532817
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatg-agagagacacctcactcttacccaaaa 413  Q
    ||||||||||||||||||||  |||||   ||||||||||| |||||||||||||||    
T  37532761 cacatcgaggctagaacaacagcacaagctagagagacaccacactcttacccaaaa 37532817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 40094784 - 40094840
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaa 413  Q
    ||||||||||||||||||||| |||||   |||||||| || |||||||||||||||    
T  40094784 cacatcgaggctagaacaacctcacaagcaagagagacgccacactcttacccaaaa 40094840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 340 - 426
Target Start/End: Complemental strand, 6421897 - 6421811
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| ||||| || ||||||||||| ||||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||    
T  6421897 ggagctcgggggaccgtccacatcgaggccagaacaaccacacaagttagagagacaccacactcttaccc-aaaaccttaaggcaat 6421811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 14745659 - 14745745
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaatg--agagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| |||||||| |||||||||||||||||||||||||  ||  |||||||| || ||||||||||| ||||||||||||||||    
T  14745659 ggagctcgggggactgtccacatcgaggctagaacaaccacac-ttgcaagagagacgccacactcttaccc-aaaaccttaaggcaat 14745745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 42514815 - 42514741
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaa 413  Q
    |||||||| ||||| || ||||||||||||||||||||| ||||| | |||||||| || |||||||||||||||    
T  42514815 ggagctcgggggaccgtccacatcgaggctagaacaaccccacaagtaagagagacgccacactcttacccaaaa 42514741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 3672849 - 3672781
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||| ||||||||||||||||| | ||||||||||| ||||||||||| |||| |||||||||||    
T  3672849 cacatcgagactagaacaaccacacaattaagagagacaccacactcttaccc-aaaatcttaaggcaat 3672781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 36178615 - 36178683
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| |||||||||||||||||||||   ||||||||||| ||||||||||| ||||||||||||||||    
T  36178615 cacatagaggctagaacaaccacacaagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 36178683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 5542617 - 5542703
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| ||||| || ||||||||| || |||||||| |||||  | |||||||||| |||||||| |||||||||||||||||||    
T  5542617 ggagctcgggggaccgtccacatcgagacttgaacaaccgcacaagcaagagagacaccacactctta-ccaaaaaccttaaggcaat 5542703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 426
Target Start/End: Complemental strand, 6421551 - 6421465
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| ||||| || ||||||||| ||||||||||| |||||   ||||||||||| ||||||||||| ||||||| ||||||||    
T  6421551 ggagctcgggggaccgtccacatcgagactagaacaaccgcacaagcaagagagacaccacactcttaccc-aaaacctcaaggcaat 6421465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 423
Target Start/End: Complemental strand, 6422267 - 6422193
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggc 423  Q
    ||||| || |||||||||||||||||||||||||||   ||||||||||| |||||||| || |||||||||||||    
T  6422267 gggacagtccacatcgaggctagaacaaccacacaagcaagagagacaccacactctta-cctaaaaccttaaggc 6422193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 423
Target Start/End: Complemental strand, 7598385 - 7598311
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggc 423  Q
    ||||| ||||||||||||||| |||||||| ||||| |||||||||||||  | |||||||| |||||||||||||    
T  7598385 gggaccgttcacatcgaggcttgaacaaccgcacaagtgagagagacaccatattcttaccc-aaaaccttaaggc 7598311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 426
Target Start/End: Original strand, 28254258 - 28254315
Alignment:
Q  367 gctagaacaaccacacaatgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||||||    
T  28254258 gctagaacaaccccacaa-gagagagacaccacactcttaccc-aaaaccttaaggcaat 28254315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 36005872 - 36005958
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| | |||||| ||||||||||||||||||||| |||||   |||||||| || |||| |||||| ||||||||||||||||    
T  36005872 ggagctcgagagactgtccacatcgaggctagaacaaccccacaagcaagagagacgccacacttttaccc-aaaaccttaaggcaat 36005958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 426
Target Start/End: Complemental strand, 37106090 - 37106004
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| ||||| || |||||||||||||||||||||  ||||   ||||||||||| ||||||||||| |||| |||||||||||    
T  37106090 ggagctcgggggaccgtccacatcgaggctagaacaaccgtacaagcaagagagacaccacactcttaccc-aaaatcttaaggcaat 37106004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 35580725 - 35580802
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacac-aatgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || ||||||||||||||||||||| ||| ||  |||||||| || ||||||||||| ||||||||||||||||    
T  35580725 gggaccgtccacatcgaggctagaacaaccccacaaacaagagagacgccgcactcttaccc-aaaaccttaaggcaat 35580802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 422
Target Start/End: Complemental strand, 7598749 - 7598685
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaagg 422  Q
    |||||||| ||| |||||||||||||| ||||||||||||| |||||||| |||||||| ||||||    
T  7598749 cacatcgatgcttgaacaaccacacaagtgagagagacaccacactctta-ccaaaaacgttaagg 7598685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 413
Target Start/End: Complemental strand, 6421774 - 6421718
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaa 413  Q
    |||||||||||  |||||||||||||| | ||||||||||| |||||||||||||||    
T  6421774 cacatcgaggccggaacaaccacacaagttagagagacaccacactcttacccaaaa 6421718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 15511505 - 15511561
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaa 413  Q
    ||||||||| |||||||||||||||||   ||||||||||| |||||||||||||||    
T  15511505 cacatcgagactagaacaaccacacaagcaagagagacaccacactcttacccaaaa 15511561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 406
Target Start/End: Complemental strand, 1770073 - 1769991
Alignment:
Q  325 tgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactctta 406  Q
    ||||||||| |||| |||||| |  |||  |||||||||||||||||||||||| |||||   ||||||||||| ||||||||    
T  1770073 tgttgggtcattgggggagctaggaggatcgttcacatcgaggctagaacaacctcacaagcaagagagacaccacactctta 1769991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 413
Target Start/End: Complemental strand, 3673250 - 3673160
Alignment:
Q  324 ttgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacac-aatgagagagacacctcactcttacccaaaa 413  Q
    ||||||||||  ||| |||||  | ||||| || ||||||||||||||||||||||||| | | ||||||||| | |||||||| ||||||    
T  3673250 ttgttgggtcactgggggagccagggggaccgtccacatcgaggctagaacaaccacactagtaagagagacatcacactcttagccaaaa 3673160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 41283476 - 41283553
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacac-aatgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || |||||| |||||||||||||||||| ||  |||||||| || |||||||| || ||||||||||||||||    
T  41283476 gggaccgtccacatcaaggctagaacaaccacacaaacaagagagacgccacactctta-cctaaaaccttaaggcaat 41283553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 962746 - 962678
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||||||||||||||||||   |||| |||| | ||||||||||| ||||||||||| ||||    
T  962746 cacatcgaggctagaacaaccacacaagcaagagtgacaacacactcttaccc-aaaaccttaagacaat 962678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 15880411 - 15880343
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||| ||||||| |||||  | ||||||| || ||||||||||| ||||||||||||||||    
T  15880411 cacatcgaggctaaaacaaccgcacaagcaagagagacgccacactcttaccc-aaaaccttaaggcaat 15880343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 413
Target Start/End: Original strand, 31899103 - 31899168
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaa 413  Q
    ||||| ||||||||||||| ||||| |||| |||||  | |||||| |||||||||||||||||||    
T  31899103 gggaccgttcacatcgaggttagaagaaccccacaagcaagagagatacctcactcttacccaaaa 31899168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 426
Target Start/End: Complemental strand, 33731804 - 33731728
Alignment:
Q  350 ggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||| ||| |||||||||||||||||||| || ||   |||||||||||  |||||||||| ||||||||||||||||    
T  33731804 ggaccgtttacatcgaggctagaacaaccgcataagcaagagagacaccatactcttaccc-aaaaccttaaggcaat 33731728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 413
Target Start/End: Complemental strand, 40734039 - 40733974
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaat-gagagagacacctcactcttacccaaaa 413  Q
    ||||| || ||||||||| || ||||||||||||||  |||| ||||||| |||||||||||||||    
T  40734039 gggaccgtccacatcgagacttgaacaaccacacaagcgagacagacaccacactcttacccaaaa 40733974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 426
Target Start/End: Original strand, 36178182 - 36178249
Alignment:
Q  359 acatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||| |||||||||||||   |||||| |||| ||||||||||| |||| |||||||||||    
T  36178182 acatcgaggctataacaaccacacaagcaagagaggcaccacactcttaccc-aaaatcttaaggcaat 36178249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 40679639 - 40679695
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaa 413  Q
    ||||||||| ||||||||||| ||||| | |||||||| || |||||||||||||||    
T  40679639 cacatcgagactagaacaaccccacaagtaagagagacgccacactcttacccaaaa 40679695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 413
Target Start/End: Complemental strand, 40733665 - 40733609
Alignment:
Q  358 cacatcgaggctagaacaaccacacaat-gagagagacacctcactcttacccaaaa 413  Q
    ||||||||| || |||| |||||||||  |||||||||||| |||||||||||||||    
T  40733665 cacatcgagacttgaactaccacacaagcgagagagacaccacactcttacccaaaa 40733609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 10074364 - 10074441
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacac-aatgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||| | ||||||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||||||||    
T  10074364 gggactatccacatcgaggctagaacaaccacactagtgagagagacaccacactcttaccc-aaaaccttaaggcaat 10074441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 12071692 - 12071765
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaagg 422  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||| || ||||||||||| ||||||||||||    
T  12071692 gggaccgttcacatcgaggctagaacaaccacacaagtgagagagacgccacactcttaccc-aaaaccttaagg 12071765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 423
Target Start/End: Original strand, 12085041 - 12085109
Alignment:
Q  355 gttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggc 423  Q
    |||| ||||||||||||||||||||||||| |||||||||| || ||||||||||| |||||||||||||    
T  12085041 gttcgcatcgaggctagaacaaccacacaagtgagagagacgccacactcttaccc-aaaaccttaaggc 12085109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 426
Target Start/End: Complemental strand, 16455073 - 16454987
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| ||||| || ||||||||||||||||||||| |||||   |||||||| || ||||||||||| ||||||||||||||||    
T  16455073 ggagctcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacgccacactcttaccc-aaaaccttaaggcaat 16454987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 3409407 - 3409339
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||||||||| |||||  | |||||||||| ||||||||||| ||||||||||||||||    
T  3409407 cacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 3409339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 29518671 - 29518587
Alignment:
Q  338 gaggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaagg 422  Q
    ||||||| || ||||| || ||||||||||||||||||||| |||||   ||||||||||| ||||||||||| ||||||||||||    
T  29518671 gaggagcgcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttaccc-aaaaccttaagg 29518587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 29519088 - 29519004
Alignment:
Q  338 gaggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaagg 422  Q
    ||||||| || ||||| || ||||||||||||||||||||| |||||   ||||||||||| ||||||||||| ||||||||||||    
T  29519088 gaggagcgcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttaccc-aaaaccttaagg 29519004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 32741347 - 32741263
Alignment:
Q  338 gaggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaagg 422  Q
    ||||||| || ||||| || ||||||||||||||||||||| |||||   ||||||||||| ||||||||||| ||||||||||||    
T  32741347 gaggagcgcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttaccc-aaaaccttaagg 32741263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 10073626 - 10073682
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaa 413  Q
    |||||||| |||||||||||||||| | ||||||||||||| |||||||||||||||    
T  10073626 cacatcgatgctagaacaaccacactagtgagagagacaccacactcttacccaaaa 10073682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 413
Target Start/End: Original strand, 5832038 - 5832093
Alignment:
Q  359 acatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaa 413  Q
    |||||||||||||||||||||||||| | ||||||||||| |||| ||||||||||    
T  5832038 acatcgaggctagaacaaccacacaagtaagagagacaccacacttttacccaaaa 5832093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 2843712 - 2843635
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || ||||||||||||||||||||||| |||   ||||||| ||| ||||||||||| ||||||||||||||||    
T  2843712 gggaccgtccacatcgaggctagaacaaccactcaagcaagagagataccacactcttaccc-aaaaccttaaggcaat 2843635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 414
Target Start/End: Complemental strand, 3409817 - 3409751
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaa 414  Q
    ||||| || ||||||||||||||||||||| |||||  | |||||||||| ||||||||||||||||    
T  3409817 gggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttacccaaaaa 3409751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 426
Target Start/End: Complemental strand, 1846912 - 1846828
Alignment:
Q  342 agctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||| ||||| || ||||||||||||||||||||| |||||   | ||||||||| |||||||| || ||||||||||||||||    
T  1846912 agctcgggggaccgtccacatcgaggctagaacaaccgcacaagcaaaagagacaccacactcttatcc-aaaaccttaaggcaat 1846828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 16107826 - 16107758
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||| ||||| |||||  | |||||||||| ||||||||||| ||||||||||||||||    
T  16107826 cacatcgaggctagagcaaccgcacaagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 16107758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 422
Target Start/End: Complemental strand, 2378308 - 2378210
Alignment:
Q  324 ttgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaagg 422  Q
    ||||||||||  | ||| |||||| ||||| || ||||||||||||||||||||||| |||   ||||||||||| || ||||| || ||||||||||||    
T  2378308 ttgttgggtcactagagaagctcgggggaccgtccacatcgaggctagaacaaccactcaagcaagagagacaccacattctta-cctaaaaccttaagg 2378210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 423
Target Start/End: Original strand, 2578444 - 2578518
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggc 423  Q
    ||||| || ||||||||||||||||||||| |||||   | ||||||||| ||||||||||| |||||||||||||    
T  2578444 gggaccgtccacatcgaggctagaacaaccgcacaagcaaaagagacaccacactcttaccc-aaaaccttaaggc 2578518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 426
Target Start/End: Complemental strand, 16454741 - 16454655
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| ||||| || ||||||||||||||||||||| |||||   |||||||| || |||||||| || |||| |||||||||||    
T  16454741 ggagctcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacgccacactcttatcc-aaaatcttaaggcaat 16454655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 426
Target Start/End: Complemental strand, 2377935 - 2377834
Alignment:
Q  325 tgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggc 423  Q
    |||||||||  ||| | |||||| |||||  | |||||||||||||||| |||||| |||   ||| ||||||| ||||||||||| |||||||||||||    
T  2377935 tgttgggtcactggggaagctcgggggaccttccacatcgaggctagaaaaaccactcaagcaagaaagacaccacactcttaccc-aaaaccttaaggc 2377837  T
Q  424 aat 426  Q
    |||    
T  2377836 aat 2377834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 423
Target Start/End: Original strand, 2579882 - 2579947
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggc 423  Q
    ||||||||||||||||||||| |||||   ||||||||||| || |||||||| |||||||||||||    
T  2579882 cacatcgaggctagaacaaccgcacaagcaagagagacaccacattcttaccc-aaaaccttaaggc 2579947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 10073992 - 10074069
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaat-gagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || ||| |||||||||||||||||| | ||  |||||||||||| |||| |||||| ||||||||||||||||    
T  10073992 gggaccgtccacgtcgaggctagaacaaccaaataagcgagagagacaccacacttttaccc-aaaaccttaaggcaat 10074069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 2579102 - 2579174
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacac-aatgagagagacacctcactcttacccaaa 412  Q
    |||||||| ||||| || ||||||||||||||||||||||||| |   ||||||||||| |||||||| |||||    
T  2579102 ggagctcg-gggaccgtgcacatcgaggctagaacaaccacacgagcaagagagacaccacactcttagccaaa 2579174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 2579502 - 2579570
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||| ||||||||||||||||   |||||||||||  ||| |||||| ||||||||||||||||    
T  2579502 cacatcgaggttagaacaaccacacaagcaagagagacaccatacttttaccc-aaaaccttaaggcaat 2579570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 3415608 - 3415538
Alignment:
Q  358 cacatcgaggctaga--acaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||||||  |||||| |||||  | |||||||||| |||||||||| |||||||||||||||||    
T  3415608 cacatcgaggctagagaacaaccgcacaagcaagagagacaccacactcttacc-aaaaaccttaaggcaat 3415538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 413
Target Start/End: Original strand, 10902452 - 10902496
Alignment:
Q  370 agaacaaccacacaa-tgagagagacacctcactcttacccaaaa 413  Q
    |||||||||| |||| ||||||||||||| |||||||||||||||    
T  10902452 agaacaaccatacaagtgagagagacaccacactcttacccaaaa 10902496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 14748334 - 14748378
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa 384  Q
    ||||| || ||||| || |||||||||||||||||||||||||||    
T  14748334 ggagcgcgggggaccgtccacatcgaggctagaacaaccacacaa 14748378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 324 - 426
Target Start/End: Original strand, 36568544 - 36568645
Alignment:
Q  324 ttgttgggtcgttg-gaggagctcgtgggactgttcacatcgaggctagaacaaccacacaatgagagagacacctcactcttacccaaaaaccttaagg 422  Q
    |||||||||| ||| | |||||||| |||||  | |||||||||| |||||||||||||||| ||||||||| || |||||||| |||||||||||||||    
T  36568544 ttgttgggtcattgaggggagctcgggggaccttccacatcgaggatagaacaaccacacaa-gagagagacgccacactctta-ccaaaaaccttaagg 36568641  T
Q  423 caat 426  Q
    ||||    
T  36568642 caat 36568645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 624362 - 624288
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaa 413  Q
    |||||||| || || || ||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||    
T  624362 ggagctcggggaaccgtccacatcgaggctagaacaaccccacaagtgagagagacaccacactcttacccaaaa 624288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 424
Target Start/End: Original strand, 42405590 - 42405672
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaatgagagagacacctcactcttacccaaaaaccttaaggca 424  Q
    |||||||| ||||| || ||||||||||||||||||||| ||||| |  ||||||||| ||||||||||| ||||||||||||||    
T  42405590 ggagctcgggggaccgtccacatcgaggctagaacaaccgcacaa-gcaagagacaccacactcttaccc-aaaaccttaaggca 42405672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 340 - 422
Target Start/End: Original strand, 1028509 - 1028591
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaagg 422  Q
    |||||| | ||||| || ||||||||||||||||||||| ||||| |||||||||| || |||||||| |||||||||||||||    
T  1028509 ggagctagggggaccgtccacatcgaggctagaacaaccgcacaagtgagagagacgccacactctta-ccaaaaaccttaagg 1028591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 430
Target Start/End: Original strand, 3295346 - 3295426
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaattggt 430  Q
    ||||| || |||||||||||||||||||||||||||   ||||||||| | ||||||||||  ||||||||||||||||||||    
T  3295346 gggaccgtccacatcgaggctagaacaaccacacaagcaagagagacaacacactcttacc--aaaaccttaaggcaattggt 3295426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 423
Target Start/End: Complemental strand, 623986 - 623901
Alignment:
Q  338 gaggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggc 423  Q
    |||||||||| ||||| ||  |||| ||||||||||||||| ||||| ||||||||||||| ||||||||| | |||||||||||||    
T  623986 gaggagctcgggggaccgtctacattgaggctagaacaaccccacaagtgagagagacaccacactcttactc-aaaaccttaaggc 623901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 6500607 - 6500530
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || ||||||||||||||||||||| |||||   ||||||||||| ||||||||||| ||||||||||||||||    
T  6500607 gggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 6500530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 26074156 - 26074224
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||| |||| ||||||||| | ||||||||||||| ||||||||||| ||||||||||||||||    
T  26074156 cacatcgaggttagagcaaccacactagtgagagagacaccacactcttaccc-aaaaccttaaggcaat 26074224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 26074760 - 26074692
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||| |||| ||||||||| | ||||||||||||| ||||||||||| ||||||||||||||||    
T  26074760 cacatcgaggttagagcaaccacactagtgagagagacaccacactcttaccc-aaaaccttaaggcaat 26074692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 423
Target Start/End: Complemental strand, 15370265 - 15370182
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggc 423  Q
    |||||||| ||||| || ||||||||||||||||||| | |||||   ||||||||||| ||||||||||| |||||||||||||    
T  15370265 ggagctcgggggaccgtccacatcgaggctagaacaatcccacaagcaagagagacaccacactcttaccc-aaaaccttaaggc 15370182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 3295016 - 3295093
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| ||||||||||||| |||||||||||||   ||||||||||| ||||| ||||| ||||||| ||||||||    
T  3295016 gggactgtccacatcgaggctacaacaaccacacaaccaagagagacaccacactcataccc-aaaacctcaaggcaat 3295093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 6500979 - 6500902
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || |||||||||||||||| |||| ||||| | ||||||||||| |||||||| || ||||||||||||||||    
T  6500979 gggaccgtccacatcgaggctagaataaccgcacaagtaagagagacaccacactcttatcc-aaaaccttaaggcaat 6500902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 413
Target Start/End: Original strand, 36492206 - 36492283
Alignment:
Q  336 tggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaa 413  Q
    ||||||||| || ||||| || |||||||||||||||||||||||||||   ||||||||||| |||||||| ||||||    
T  36492206 tggaggagc-cgagggaccgtccacatcgaggctagaacaaccacacaagcaagagagacaccacactcttatccaaaa 36492283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 40296316 - 40296393
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || ||||||||||||||||||||| |||||   ||||||||||| ||||||||||| ||||||| ||||||||    
T  40296316 gggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacaccacactcttaccc-aaaacctcaaggcaat 40296393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 34753035 - 34753103
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||||||||| |||||   |||||||| || ||||||||||| ||||||||||||||||    
T  34753035 cacatcgaggctagaacaaccgcacaagcaagagagacgccacactcttaccc-aaaaccttaaggcaat 34753103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 424
Target Start/End: Original strand, 26590920 - 26590986
Alignment:
Q  358 cacatcgaggctagaacaaccacac-aatgagagagacacctcactcttacccaaaaaccttaaggca 424  Q
    |||||||||| |||||||||||||| | |||||||||| || ||||||||| | ||||||||||||||    
T  26590920 cacatcgaggttagaacaaccacactagtgagagagacgccacactcttactc-aaaaccttaaggca 26590986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 27502028 - 27502114
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||| | ||||| || |||||||||| ||||||||||||||||   ||||||||||| |||| ||| ||||||| |||||||||||    
T  27502028 ggagctagggggaccgtccacatcgaggatagaacaaccacacaagcaagagagacaccacactttta-ccaaaaatcttaaggcaat 27502114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 35150163 - 35150086
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || ||||| |||| |||||||||||||| | ||||||||||||| |||| |||||| ||||||||||| ||||    
T  35150163 gggacggtccacattgaggttagaacaaccacactagtgagagagacaccacacttttaccc-aaaaccttaagacaat 35150086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 18603130 - 18603198
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||||| |||||||||   |||||||  || ||||||||||| ||||||||||||||||    
T  18603130 cacatcgaggctagaactaccacacaagcaagagagatgccacactcttaccc-aaaaccttaaggcaat 18603198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 426
Target Start/End: Complemental strand, 41170777 - 41170714
Alignment:
Q  363 cgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||||||||||   ||| | ||||| ||||||||||| ||||||||||||||||    
T  41170777 cgaggctagaacaaccacacaagcaagaaaaacaccacactcttaccc-aaaaccttaaggcaat 41170714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 48588498 - 48588566
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||||||||| ||||| | ||||||||||| ||||||||||| ||||||||||||||||    
T  48588498 cacatcgaggctagaacaaccgcacaagtaagagagacaccgcactcttaccc-aaaaccttaaggcaat 48588566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 426
Target Start/End: Complemental strand, 41142535 - 41142452
Alignment:
Q  344 ctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||| ||||| || |||||||||||||||||||||||||||   |||||||| || |||||||  |||||||||||||||||||    
T  41142535 ctcgggggaccgtccacatcgaggctagaacaaccacacaagcaagagagacgccacactctttaccaaaaaccttaaggcaat 41142452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 14319024 - 14318947
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || ||||| ||||||||||||||| ||||| | ||||||||||| ||||||||||| ||||||||||||||||    
T  14319024 gggaccgtccacattgaggctagaacaaccgcacaaataagagagacaccacactcttaccc-aaaaccttaaggcaat 14318947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 361 - 426
Target Start/End: Original strand, 26661535 - 26661600
Alignment:
Q  361 atcgaggctagaacaaccacacaat-gagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||| ||||||||||||||  |||||||||||| ||||||||||| ||||||||||||||||    
T  26661535 atcgaggcttgaacaaccacacaagcgagagagacaccacactcttaccc-aaaaccttaaggcaat 26661600  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 34649595 - 34649520
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacac-aatgagagagacacctcactcttacccaaaaaccttaaggca 424  Q
    ||||| || ||||||||||||||||||||||||| |   |||||||| |||||||||||||| ||||||||||||||    
T  34649595 gggaccgtccacatcgaggctagaacaaccacactagcaagagagacgcctcactcttaccc-aaaaccttaaggca 34649520  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 3875323 - 3875409
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacac-aatgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||  |||| || ||||||||||||||||||||||||| | |||||||||| || || ||||| || ||||||||||||||||    
T  3875323 ggagctcggaggaccgtccacatcgaggctagaacaaccacactagtgagagagactccacattctta-cctaaaaccttaaggcaat 3875409  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 423
Target Start/End: Complemental strand, 37555909 - 37555812
Alignment:
Q  325 tgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggc 423  Q
    ||||||||| |||| |||||||| | ||| |  |||||||||||| ||||||||||||||  | |||||||||| ||||||||||| |||||||||||||    
T  37555909 tgttgggtcattgggggagctcgagcgaccgc-cacatcgaggcttgaacaaccacacaagcaagagagacaccacactcttaccc-aaaaccttaaggc 37555812  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 426
Target Start/End: Original strand, 44290434 - 44290536
Alignment:
Q  324 ttgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaagg 422  Q
    ||||||||||  ||| |||||||| ||||| || |||||||||||||||||||||  ||||   ||| |||||||  |||||||||| ||||||||||||    
T  44290434 ttgttgggtcactgggggagctcgggggaccgtccacatcgaggctagaacaaccgtacaagcaagaaagacaccatactcttaccc-aaaaccttaagg 44290532  T
Q  423 caat 426  Q
    ||||    
T  44290533 caat 44290536  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 426
Target Start/End: Original strand, 44290816 - 44290903
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| ||||| || ||||||||||||||||||||| |||||   ||||| ||||| |||||||  || ||||||||||||||||    
T  44290816 ggagctcgggggaccgtccacatcgaggctagaacaaccgcacaagcaagagatacaccacactctttacccaaaaccttaaggcaat 44290903  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 430
Target Start/End: Complemental strand, 9956058 - 9955985
Alignment:
Q  357 tcacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggcaattggt 430  Q
    |||||||||||||||| ||||| |||||  | |||||||| | ||||||||||||||| ||||||||||||||||    
T  9956058 tcacatcgaggctagagcaaccgcacaagcaagagagacatcacactcttacccaaaa-ccttaaggcaattggt 9955985  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 32168699 - 32168776
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||| ||||||||||||||||||||| |||||   |||||||| || ||||||||||| ||||||| ||||||||    
T  32168699 gggactgtccacatcgaggctagaacaaccgcacaagcaagagagacgccacactcttaccc-aaaacctcaaggcaat 32168776  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 423
Target Start/End: Complemental strand, 37556259 - 37556194
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggc 423  Q
    |||||||||||| ||||||||||||||  | |||||||||| ||||||||||| |||||||||||||    
T  37556259 cacatcgaggcttgaacaaccacacaagcaagagagacaccacactcttaccc-aaaaccttaaggc 37556194  T

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Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 426
Target Start/End: Complemental strand, 41759640 - 41759563
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || |||||| ||||||||||||||||| ||  | |||||||||| ||||||||||| ||||||||||||||||    
T  41759640 gggaccgtccacatcaaggctagaacaaccacataagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 41759563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 41157139 - 41157071
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||||||||||||||||||   | ||||||||| ||||||||||| |||||||||| |||||    
T  41157139 cacatcgaggctagaacaaccacacaagcaatagagacaccacactcttaccc-aaaaccttaaagcaat 41157071  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 426
Target Start/End: Original strand, 24600318 - 24600392
Alignment:
Q  352 actgttcacatcgaggctagaacaaccacac-aatgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| |||||||||||||||||||||| || |  |||||||||||| ||||||||| | ||||||||||| ||||    
T  24600318 actgtccacatcgaggctagaacaaccatactagcgagagagacaccacactcttacac-aaaaccttaagacaat 24600392  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 426
Target Start/End: Complemental strand, 40082572 - 40082486
Alignment:
Q  340 ggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||  ||||| | ||||||||||||||||||| | |||||   ||||||| ||| ||||||||||| ||||||||||||||||    
T  40082572 ggagctcggaggactatccacatcgaggctagaacaaacgcacaagcaagagagataccacactcttaccc-aaaaccttaaggcaat 40082486  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 3537600 - 3537677
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || ||||||||||||||||||||| |||||   |||||||| || ||||||||||| ||||||||||| ||||    
T  3537600 gggaccgtccacatcgaggctagaacaaccgcacaagcaagagagacgccacactcttaccc-aaaaccttaagccaat 3537677  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 426
Target Start/End: Original strand, 24131999 - 24132063
Alignment:
Q  359 acatcgaggctagaacaaccacac-aatgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||||||||||||||| | ||||||||||||  ||| |||||||  |||||||||||||||    
T  24131999 acatcgaggctagaacaaccacactagtgagagagacac--cacacttaccc--aaaccttaaggcaat 24132063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 30630639 - 30630716
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||| |||||||||||| |||||||||||| || ||| || ||| || ||||||||||| ||||| ||||||||||    
T  30630639 gggactgctcacatcgaggccagaacaaccacataagtgatagggacgccccactcttaccc-aaaactttaaggcaat 30630716  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 37850601 - 37850659
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactctta 406  Q
    ||||| || ||||||||||||||| ||||| ||||| ||||||||||||| ||||||||    
T  37850601 gggaccgtccacatcgaggctagagcaaccgcacaagtgagagagacaccacactctta 37850659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 426
Target Start/End: Original strand, 39066209 - 39066278
Alignment:
Q  357 tcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||| ||||||||||||||||| || | ||||||||||| |||||||| || ||||||||||| ||||    
T  39066209 tcacatcaaggctagaacaaccacataagtaagagagacaccacactcttatcc-aaaaccttaagacaat 39066278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 426
Target Start/End: Original strand, 45493975 - 45494052
Alignment:
Q  349 gggactgttcacatcgaggctagaacaaccacacaatg-agagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||| || |||||||||||| ||||||||||| || | ||||||||||| |||||||| || ||||| ||||||||||    
T  45493975 gggaccgtccacatcgaggcttgaacaaccacataaggaagagagacaccacactcttatcc-aaaactttaaggcaat 45494052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 41157523 - 41157455
Alignment:
Q  358 cacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||||||||||||||||||   ||| ||||||| ||||||||| | ||||||| ||||||||    
T  41157523 cacatcgaggctagaacaaccacacaagcaagacagacaccacactcttactc-aaaacctaaaggcaat 41157455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 426
Target Start/End: Complemental strand, 17294696 - 17294657
Alignment:
Q  386 gagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||| ||||||||||| ||||||||||||||||    
T  17294696 gagagagacaccacactcttaccc-aaaaccttaaggcaat 17294657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 426
Target Start/End: Original strand, 26661921 - 26661976
Alignment:
Q  371 gaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||  | |||||||||| ||||||||||| ||||||||||||||||    
T  26661921 gaacaaccacacaagcaagagagacaccacactcttaccc-aaaaccttaaggcaat 26661976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 426
Target Start/End: Original strand, 1083 - 1184
Alignment:
Q  325 tgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccaca-caatgagagagacacctcactcttacccaaaaaccttaaggc 423  Q
    |||||||||  ||| |||||| | || || || ||||||||||||||||||||||||  ||  |||||||||||  |||||||||| |||||||||||||    
T  1083 tgttgggtcactgggggagcttggggaaccgtccacatcgaggctagaacaaccacataaacaagagagacaccatactcttaccc-aaaaccttaaggc 1181  T
Q  424 aat 426  Q
    |||    
T  1182 aat 1184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 426
Target Start/End: Original strand, 1730 - 1769
Alignment:
Q  386 gagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  1730 gagagagacaccacactctta-ccaaaaaccttaaggcaat 1769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 5545 - 5476
Alignment:
Q  358 cacatcgaggctagaacaaccacacaatga-gagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    |||||||||||| |||||||| |||||  | |||||||||| ||||||||||||||||| ||||| ||||    
T  5545 cacatcgaggcttgaacaaccccacaagcaagagagacaccacactcttacccaaaaactttaagacaat 5476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 426
Target Start/End: Original strand, 491 - 592
Alignment:
Q  325 tgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacccaaaaaccttaaggc 423  Q
    |||||||||  ||| | |||||| |||||  | |||||||||||||||| |||||| |||   ||| ||||||| ||||||||||| |||||||||||||    
T  491 tgttgggtcactggggaagctcgggggaccttccacatcgaggctagaaaaaccactcaagcaagaaagacaccacactcttaccc-aaaaccttaaggc 589  T
Q  424 aat 426  Q
    |||    
T  590 aat 592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 408
Target Start/End: Original strand, 123 - 208
Alignment:
Q  324 ttgttgggtcgttggaggagctcgtgggactgttcacatcgaggctagaacaaccacacaa-tgagagagacacctcactcttacc 408  Q
    ||||||||||  | ||| |||||| ||||| || ||||||||||||||||||||||| |||   ||||||||||| || |||||||    
T  123 ttgttgggtcactagagaagctcgggggaccgtccacatcgaggctagaacaaccactcaagcaagagagacaccacattcttacc 208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 426
Target Start/End: Complemental strand, 5130 - 5062
Alignment:
Q  358 cacatcgaggctagaacaaccacacaat-gagagagacacctcactcttacccaaaaaccttaaggcaat 426  Q
    ||||||||||||||| ||||| || ||  |||||||||||| ||||||||||| |||||| |||||||||    
T  5130 cacatcgaggctagagcaaccgcataagcgagagagacaccacactcttaccc-aaaaccataaggcaat 5062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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