View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9482H-LTR4-TNT-insertion-3 (Length: 446)

Name: F9482H-LTR4-TNT-insertion-3
Description: F9482H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9482H-LTR4-TNT-insertion-3
F9482H-LTR4-TNT-insertion-3
[»] chr4 (1 HSPs)
chr4 (10-428)||(40056886-40057304)


Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 10 - 428
Target Start/End: Complemental strand, 40057304 - 40056886
Alignment:
Q  10 ggttttgttacctaaatgaaaccatgcataaatatgtagactatatgatcctcaaaatagatgacatgttgattgcatgcaacatcaaggaggaatttga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40057304 ggttttgttacctaaatgaaaccatgcataaatatgtagactatatgatcctcaaaatagatgacatgttgattgcatgcaacatcaaggaggaatttga 40057205  T
Q  110 taaagtaaaagtgatgctttaaattgaatttcaaatgaaggatatgagagctgcaagttaaattttggcaaagaagattcttagggacatatcaaaggga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40057204 taaagtaaaagtgatgctttaaattgaatttcaaatgaaggatatgagagctgcaagttaaattttggcaaagaagattcttagggacatatcaaaggga 40057105  T
Q  210 acatttttagatgcctaaaaggtgcttgtgcttctgaagtgggtattctctacacaatggatgatggaagcaatggcagagttactagtttgtggattca 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40057104 acatttttagatgcctaaaaggtgcttgtgcttctgaagtgggtattctctacacaatggatgatggaagcaatggcagagttactagtttgtggattca 40057005  T
Q  310 tattatgcactatgtgttaggtaattggaaattattttttcttttgacagaagataactaggaagttagtgcggtagttattctgttatcttcttataac 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40057004 tattatgcactatgtgttaggtaattggaaattattttttcttttgacagaagataactaggaagttagtgcggtagttattctgttatcttcttataac 40056905  T
Q  410 aatgtttaatctccaattg 428  Q
    |||||||||||||||||||    
T  40056904 aatgtttaatctccaattg 40056886  T

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