View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9482H-LTR4-TNT-insertion-6 (Length: 656)
Name: F9482H-LTR4-TNT-insertion-6
Description: F9482H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9482H-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 190 - 646
Target Start/End: Complemental strand, 37169254 - 37168798
Alignment:
| Q |
190 |
gcagactgagatagggattgtctataatgactgaaacgcctctgtaaaaaggtttagtaagtcaactattcaacggtcaatcctgctagtaattttttat |
289 |
Q |
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| T |
37169254 |
gcaggctgagatagggattgtctataatgactgaaacgcctctgtaaaaaggtttagtaagtcaactattcaacggtcaatcctgctagtaattttttat |
37169155 |
T |
|
| Q |
290 |
gcatctgctagtgtttattaatggccaaacaaagaagattgtgtaaggtggttgatcaagttagctttgctttatccttgacgacatgtttactttgagg |
389 |
Q |
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| T |
37169154 |
gcatctgctagtgtttattaatggccaaacaaagaagattgtgtaaggtggttgatcaagttagctttgctttatccttgacgacatgtttactttgagg |
37169055 |
T |
|
| Q |
390 |
attgttggnnnnnnnnnnggagaagcataaagttaggatcaataatataatgtgtgaaaacatgtttactttgacgacatgtttattaatggccctcaca |
489 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37169054 |
attgttggaaaaaaaaaaggagaagcataaagttaggatcaataatataatgtgtgaaaacatgtttactttgacgacatgtttattaatggccctcaca |
37168955 |
T |
|
| Q |
490 |
tagtgttcgtaaaatgaaaatattgatgatgaatgacaatataatatctatagaagcaaagacacagttaataatgatatgcacatatgcacattttttg |
589 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37168954 |
tagtgttcgtagaatgaaaatattgatgatgaatgacaatataatatctatagaagcagagacacagttaataatgatatgcacatatgcacattttttg |
37168855 |
T |
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| Q |
590 |
ttattctagtttctaatctatcaattataaaatctaagatttcaatctcctcgaatt |
646 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37168854 |
ttattctagtttctaatctatcaattataagatctaagatttcaatctcctcgaatt |
37168798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 10 - 160
Target Start/End: Complemental strand, 37169434 - 37169284
Alignment:
| Q |
10 |
atagggcagggaccctggaggggtgtgacgaattgaggaagggaaagtttgtcacgtggcaaaggtttctttgaagcatagctcaagctttgacaaatta |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37169434 |
atagggcagggaccctggaggggtgtgacgaattgaggaagggaaagtttgtcacgtggcaaaggtttctttgaagcatagctcaagctttgacaaatta |
37169335 |
T |
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| Q |
110 |
ctgggtaggttactctcatgagcgtgtgatacagactgtggtgtgtgaagc |
160 |
Q |
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| T |
37169334 |
ctgggtaggttactctcatgagcgtgtgatacagactgtggtgtgtgaagc |
37169284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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