View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9482H-LTR4-TNT-insertion-8 (Length: 596)
Name: F9482H-LTR4-TNT-insertion-8
Description: F9482H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9482H-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr6 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 9 - 588
Target Start/End: Original strand, 2283846 - 2284425
Alignment:
| Q |
9 |
gaccaacttaaaaacgcattctcacacacttttctcacaacatccatactcaacacatcaacacttgatttatacatgtatttcaaattcctttttgtgt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2283846 |
gaccaacttaaaaacgcattctcacacacttttctcacaacatccatactcaacacatcaacacttgatttatacatgtatttcaaattcctttttgtgt |
2283945 |
T |
|
| Q |
109 |
cactccattttggtgagtcttggaagaaggcatagcttgaagacatctctaaaccattttgtttgtgactatgttttggtaaatcagggacaccacaacg |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2283946 |
cactccattttggtgagtcttggaagaaggcatagcttgaagacatctctaaaccattttgtttgtgactatgttttggtaaatcagggacaccacaacg |
2284045 |
T |
|
| Q |
209 |
tggaagactcaagatttttatggttgtagtgtctacacgaccagttacatgtaggtgatggtatgtttgaaaatctttgagggcaaattccaagttttca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2284046 |
tggaagactcaagatttttatggttgtagtgtctacacgaccagttacatgtaggtgatggtatgtttgaaaatctttgagggcaaattccaagttttca |
2284145 |
T |
|
| Q |
309 |
ccaaaatggtcgtttagagtagtggaaggagtagcgtcatgttgaacatttaggtagccaaatcttttaaggtaatttttgagttctccaatgccttttt |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2284146 |
tcaaaatggtcgtttagagtagtggaaggagtagcgtcatgttgaacatttaggtagccaaatcttttaaggtaatttttgagttctccaatgccttttt |
2284245 |
T |
|
| Q |
409 |
gtgtttgtcccttttgaacacctttgaggttttgaagactttgggtgaatgaatccttggaaggttttatggttcttgactcaacaatggaaaatggatt |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2284246 |
gtgtttgtcccttttgaacacctttgaggttttgaagactttgggtgaatgaatccttggaaggttttatggttcttgactcaacaatggaaaatggatt |
2284345 |
T |
|
| Q |
509 |
ttctaaaaggagtaataaaaggaaagagattgaaagtttagcgagattaagagccatattggcactatagtgtgatatta |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2284346 |
ttctaaaaggagtaataaaaggaaagagattgaaagtttagcgagattaagagccatattggcactatagtgtgatatta |
2284425 |
T |
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