View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9488H-LTR4-TNT-insertion-1 (Length: 548)
Name: F9488H-LTR4-TNT-insertion-1
Description: F9488H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9488H-LTR4-TNT-insertion-1 |
 | |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 7 - 351
Target Start/End: Complemental strand, 51489773 - 51489429
Alignment:
| Q |
7 |
aattagggtcagcatcgaggcttagaaaagggtagatgttaaatgtaagagggccattactttggctaagaaatttgattattgacatcatttgattttg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51489773 |
aattagggtcagcatcgaggcttagaaaagggtagatgttaaatgtaagagggccattactttggctaagaaatttgattattgacatcatttgattttg |
51489674 |
T |
|
| Q |
107 |
aatgtctggtctaaagtgtccacctgacggaagaccagtgtcactttggtagacatcagcatttaaaggagttgttacttttacttgtcttcctaaacct |
206 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51489673 |
aatgtctggtctaaagtgtccacctgatggaagaccagtgtcactttggtagacatcagcatttaaaggagttgttacttttacttgtcttcctaaacct |
51489574 |
T |
|
| Q |
207 |
gcttttataagggctgcttgaatgttttttatggctggaaatgttgattgcacaaatcgtccattgtatgtttttaaaaaagcttcattaccaacagcaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51489573 |
gcttttataagggctgcttgaatgttttttatggctggaaatgttgattgcacaaatcgtccattgtatgtttttaaaaaagcttcattaccaacagcaa |
51489474 |
T |
|
| Q |
307 |
catacctgggaattaattttacaaaacgttggttagttacaattg |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51489473 |
catacctgggaattaattttacaaaacgttggttagttacaattg |
51489429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 366 - 540
Target Start/End: Original strand, 12089362 - 12089536
Alignment:
| Q |
366 |
aggggcttttttgtcaaaaaatgacaacagtagtattccgatttgaaggaagaatagagatattcttgatatttgtaagaagtttctctttgtnnnnnnn |
465 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12089362 |
aggggcttttttgtcaaaaaatgacaacagtagtattccgatttgaaggaagaatagagatattcttgatatttgtaagaagtttctctttgtaaaaaaa |
12089461 |
T |
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| Q |
466 |
nctaaggaatagttgaatttcattaaaaaatcgagtttttattctattaaattattgttatcattcgaatgaatt |
540 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12089462 |
actaaggaatagttgaatttcattaaaaaatcgagtttttattctattaaattattgttatcattcgaatgaatt |
12089536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 366 - 540
Target Start/End: Original strand, 420822 - 420996
Alignment:
| Q |
366 |
aggggcttttttgtcaaaaaatgacaacagtagtattccgatttgaaggaagaatagagatattcttgatatttgtaagaagtttctctttgtnnnnnnn |
465 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
420822 |
aggggcttttttgtcaaaaaatgacaacagtagtattccgatttgaaggaagaatagagatattcttgatatttgtaagaagtttctctttgtaaaaaaa |
420921 |
T |
|
| Q |
466 |
nctaaggaatagttgaatttcattaaaaaatcgagtttttattctattaaattattgttatcattcgaatgaatt |
540 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
420922 |
actaaggaatagttgaatttcattaaaaaatcgagtttttattctattaaattattgttatcattcgaatgaatt |
420996 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 7e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 366 - 540
Target Start/End: Complemental strand, 20159628 - 20159452
Alignment:
| Q |
366 |
aggggcttttttgtcaaaaaatgacaacagtagtattccgatttgaaggaagaatagagatattcttgatatttgtaagaagtttctctttgt--nnnnn |
463 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20159628 |
aggggcttttttgtcaaaaaatgacaacagtagtattccgaattgaaggaagaatagagatattcttgatatttgtaagaagtttctctttgtaaaaaaa |
20159529 |
T |
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| Q |
464 |
nnnctaaggaatagttgaatttcattaaaaaatcgagtttttattctattaaattattgttatcattcgaatgaatt |
540 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20159528 |
aaactaaggaatagttgaatttcattaaaaaatcgagtttttattctattaaattattgttatcattcgaatgaatt |
20159452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 476 - 535
Target Start/End: Original strand, 50746105 - 50746164
Alignment:
| Q |
476 |
agttgaatttcattaaaaaatcgagtttttattctattaaattattgttatcattcgaat |
535 |
Q |
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|||||||||||||||||| || || ||||||||||||||||||||||||| |||| |||| |
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| T |
50746105 |
agttgaatttcattaaaagattgaatttttattctattaaattattgttaccatttgaat |
50746164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 366 - 458
Target Start/End: Original strand, 36332673 - 36332765
Alignment:
| Q |
366 |
aggggcttttttgtcaaaaaatgacaacagtagtattccgatttgaaggaagaatagagatattcttgatatttgtaagaagtttctctttgt |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36332673 |
aggggcttttttgtcaaaaaatgacaacagtagtattccgatttgaaggaagaatagagatattcttgatatttgtaagaagtttctctttgt |
36332765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 467 - 540
Target Start/End: Complemental strand, 4329089 - 4329016
Alignment:
| Q |
467 |
ctaaggaatagttgaatttcattaaaaaatcgagtttttattctattaaattattgttatcattcgaatgaatt |
540 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4329089 |
ctaaggaatagttaaatttcattaaaaaatcaagtttttattctattaaattattgttatcattcgaatgaatt |
4329016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 540
Target Start/End: Original strand, 24692980 - 24693047
Alignment:
| Q |
475 |
tagttgaatttcattaaaaaa--tcgagtttttattctattaaattattgttatcattcgaatgaatt |
540 |
Q |
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||||||||||||||||||||| | |||||||||||| |||||||||||||||||| | |||||||| |
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| T |
24692980 |
tagttgaatttcattaaaaaaaataaagtttttattctgttaaattattgttatcatacaaatgaatt |
24693047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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