View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9488H-LTR4-TNT-insertion-3 (Length: 395)
Name: F9488H-LTR4-TNT-insertion-3
Description: F9488H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9488H-LTR4-TNT-insertion-3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 385
Target Start/End: Complemental strand, 53341612 - 53341234
Alignment:
| Q |
7 |
acaaggtcagtgtgagtggtggtagccccctgtgaaaaacaccaaaatcaataatttaagcaaaacaataaaattgttagggcataatcatatcatatag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53341612 |
acaaggtcagtgtgagtggtggtagccccctgtgaaaaacaccaaaatcaataatttaagcaaaacaataaaattgttagggcataatcatatcatatag |
53341513 |
T |
|
| Q |
107 |
attagatatgcttatgagagtagctgccatttcaaaaggatcaccaacaacaaggaaatcagcatgagaaagttgagcttgggagagaatatcatccgct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53341512 |
attagatatgcttatgagagtagctgccatttcaaaaggatcaccaacaacaaggaaatcagcatgagaaagttgagcttgggagagaatatcatccgct |
53341413 |
T |
|
| Q |
207 |
ttttcttcaaccatttctctatcggcaagtgtaatgggtttaccgtatagtttttcaaggttggagaggccgtatgaggagagaccgaaggagggaaggg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
53341412 |
ttttcttcaaccatttctctatcggcaagtgtaatgggtttaccgtatagtttttcaaggttggagaggccgtatgaagagagaccgaaggagggaaggg |
53341313 |
T |
|
| Q |
307 |
aagtgtaagcttccatgtaaaaccacagtgccagctattgaatcctattagttcaaaggctataggtattatcagaatt |
385 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53341312 |
aagtgtaagcttccatgtaaaaccacagtgccagctattgaatcctattagttcaaaggctataggtattatcagaatt |
53341234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 7 - 327
Target Start/End: Original strand, 53053943 - 53054252
Alignment:
| Q |
7 |
acaaggtcagtgtgagtggtggtagccccctgtgaaaaacaccaaaatcaataatttaagcaaaacaataaaattgttagggcataatcatatcatatag |
106 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||| |
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| T |
53053943 |
acaaggtcagtgtgagtggtag-----ccctgtgaaaaacaccaaaatcaataactgaagcaaaacaataaaattgttaaggcataatcatatcatatag |
53054037 |
T |
|
| Q |
107 |
attagatatgcttatgagagtagctgccatttcaaaaggatcaccaacaacaaggaaatcagcatgagaaagttgagcttgggagagaatatcatccgct |
206 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53054038 |
attagatatg------agagtagatgcatacccaaaaggatcaccaacaacaaggaaagcagaatgagaaagttgagcttgggagagaatatcatccgct |
53054131 |
T |
|
| Q |
207 |
ttttcttcaaccatttctctatcggcaagtgtaatgggtttaccgtatagtttttcaaggttggagaggccgtatgaggagagaccgaaggagggaaggg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| |||||| |
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|
| T |
53054132 |
ttttcttcaaccatttctctatcggcaagaataatgggtttaccgtatagtttttcgaggttggagaggccgtgtgaagagagaccgaaggagagaaggg |
53054231 |
T |
|
| Q |
307 |
aagtgtaagcttccatgtaaa |
327 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
53054232 |
aagtgtaagcttccatgtaaa |
53054252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 151 - 327
Target Start/End: Original strand, 48825677 - 48825853
Alignment:
| Q |
151 |
caacaacaaggaaatcagcatgagaaagttgagcttgggagagaatatcatccgctttttcttcaaccatttctctatcggcaagtgtaatgggtttacc |
250 |
Q |
| |
|
|||||||||||||| || |||||||||| |||||||| || |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48825677 |
caacaacaaggaaagcaacatgagaaagatgagcttgagatagaataacatcaactttttcttcaaccatttctctatcggcaagtgtaatgggtttacc |
48825776 |
T |
|
| Q |
251 |
gtatagtttttcaaggttggagaggccgtatgaggagagaccgaaggagggaagggaagtgtaagcttccatgtaaa |
327 |
Q |
| |
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||||||||||| | |||||||||||| | ||| ||||| ||||||||| | ||||||||||||||||||||||||| |
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| T |
48825777 |
atatagtttttctaagttggagaggccttttgaagagaggccgaaggagaggagggaagtgtaagcttccatgtaaa |
48825853 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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