View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9488H-LTR4-TNT-insertion-4 (Length: 557)
Name: F9488H-LTR4-TNT-insertion-4
Description: F9488H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9488H-LTR4-TNT-insertion-4 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 7 - 386
Target Start/End: Complemental strand, 43810833 - 43810454
Alignment:
| Q |
7 |
aaggagaatttcagtttcaaagccatgccctagtcctagagaagagatagataatggcggcgcagaattgcctggtgcaatgacactatcagatttcatg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43810833 |
aaggagaatttcagtttcaaagccatgccctagtcctagagaagagatagataatggcggcgcagaattgcctggtgcaatgacactatcagatttcatg |
43810734 |
T |
|
| Q |
107 |
ggttggggatctgatcaacccgacacagacatgaagaaggacccttttgaaatttcagatgacttttacaaagacattgaaaccaagcagcaacaaaaac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43810733 |
ggttggggatctgatcaacccgacacagacatgaagaaggacccttttgaaatttcagatgacttttacaaagacattgaaaccaagcagcaacaaaaac |
43810634 |
T |
|
| Q |
207 |
ttccggccgtagtgaccaacaagaaggtgtcatacctcgagacattgggagtcatgagaagtccgacgtcgcgtcattaaagcaccgtacttagattcat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43810633 |
ttccggccgtagtgaccaacaagaaggtgtcatacctcgagacattgggagtcatgagaagtccgacgtcgcgtcattaaagcaccgtacttagattcat |
43810534 |
T |
|
| Q |
307 |
agagatgtttaattcgtcggagtcttgtttgtttttgatcgattctctccttttgtacataggaatggcagagtcaattg |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43810533 |
agagatgtttaattcgtcggagtcttgtttgtttttgatcgattctctccttttgtacataggaatggcagaatcaattg |
43810454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 429 - 497
Target Start/End: Original strand, 40519221 - 40519289
Alignment:
| Q |
429 |
gaaacaagcacacttggagagcgcagtacaatggatagttgtatgctgcgttcgggaaggatgaatcgc |
497 |
Q |
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| T |
40519221 |
gaaacaagcacacttggagagcgcagtacaatggatagttgtatgctgcgttcgggaaggatgaatcgc |
40519289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 427 - 477
Target Start/End: Complemental strand, 26374908 - 26374858
Alignment:
| Q |
427 |
gggaaacaagcacacttggagagcgcagtacaatggatagttgtatgctgc |
477 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26374908 |
gggaaacaagcacacttggagagcacagtacaatggatagttgtatgctgc |
26374858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 425 - 534
Target Start/End: Complemental strand, 186226 - 186117
Alignment:
| Q |
425 |
aggggaaacaagcacacttggagagcgcagtacaatggatagttgtatgctgcgttcgggaaggatgaatcgctcccgaaaaggaatctattgattctct |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
186226 |
aggggaaacaagcacacttggagagcgcagtacaatggatagttgtatgctgcgttcgggaaggatgaatcgctcccgaaaaggaatctattgattctct |
186127 |
T |
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| Q |
525 |
cccaattggt |
534 |
Q |
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|||||||||| |
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| T |
186126 |
cccaattggt |
186117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 425 - 533
Target Start/End: Original strand, 491284 - 491392
Alignment:
| Q |
425 |
aggggaaacaagcacacttggagagcgcagtacaatggatagttgtatgctgcgttcgggaaggatgaatcgctcccgaaaaggaatctattgattctct |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
491284 |
aggggaaacaagcacacttggagagcgcagtacaatggatagttgtatgctgcgttcgggaaggatgaatcgctcccgaaaaggaatctattgattctct |
491383 |
T |
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| Q |
525 |
cccaattgg |
533 |
Q |
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||||||||| |
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| T |
491384 |
cccaattgg |
491392 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 425 - 533
Target Start/End: Complemental strand, 13222891 - 13222783
Alignment:
| Q |
425 |
aggggaaacaagcacacttggagagcgcagtacaatggatagttgtatgctgcgttcgggaaggatgaatcgctcccgaaaaggaatctattgattctct |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13222891 |
aggggaaacaagcacacttggagagcgcagtacaatggatagttgtatgctgcgttcgggaaggatgaatcgctcccgaaaaggaatctattgattctct |
13222792 |
T |
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| Q |
525 |
cccaattgg |
533 |
Q |
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| T |
13222791 |
cccaattgg |
13222783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 454 - 533
Target Start/End: Complemental strand, 25811141 - 25811063
Alignment:
| Q |
454 |
gtacaatggatagttgtatgctgcgttcgggaaggatgaatcgctcccgaaaaggaatctattgattctctcccaattgg |
533 |
Q |
| |
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||||||||||||||||||||||||||||||||| || |||||||| |||||||||| ||| || |||||||| ||||||| |
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| T |
25811141 |
gtacaatggatagttgtatgctgcgttcgggaatgacgaatcgct-ccgaaaaggattctttttattctctctcaattgg |
25811063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 425 - 533
Target Start/End: Original strand, 34654612 - 34654720
Alignment:
| Q |
425 |
aggggaaacaagcacacttggagagcgcagtacaatggatagttgtatgctgcgttcgggaaggatgaatcgctcccgaaaaggaatctattgattctct |
524 |
Q |
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||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34654612 |
aggggaaacaagcacacatggagagcgcaatacaatggatagttgtatgctgcgttcgggaaggatgaatcgctcccgaaaaggaatctattgattctct |
34654711 |
T |
|
| Q |
525 |
cccaattgg |
533 |
Q |
| |
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||||||||| |
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| T |
34654712 |
cccaattgg |
34654720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 425 - 533
Target Start/End: Original strand, 3856363 - 3856471
Alignment:
| Q |
425 |
aggggaaacaagcacacttggagagcgcagtacaatggatagttgtatgctgcgttcgggaaggatgaatcgctcccgaaaaggaatctattgattctct |
524 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||| |
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|
| T |
3856363 |
aggggaaacaagcacacttggagagagcagtacaatggatagttgtatgttgcgttcgggaaggatgaatcgctcccgaataggaatttattgattctct |
3856462 |
T |
|
| Q |
525 |
cccaattgg |
533 |
Q |
| |
|
|||||||| |
|
|
| T |
3856463 |
tccaattgg |
3856471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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