View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9493H-LTR4-TNT-insertion-2 (Length: 281)
Name: F9493H-LTR4-TNT-insertion-2
Description: F9493H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9493H-LTR4-TNT-insertion-2 |
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| [»] scaffold0199 (1 HSPs) |
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Alignment Details
Target: scaffold0199 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 271
Target Start/End: Complemental strand, 17209 - 16945
Alignment:
| Q |
7 |
atgttaaggaaatgtaattttttgtaaattttaagaggatgtagaaatatatgttaaaccctactccctctgtatttcgagaaaagaaaataaactactt |
106 |
Q |
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| T |
17209 |
atgttaaggaaatgtaattttttgtaaattttaagaggatgtagaaatatatgttaaaccctactccctctgtatttcgagaaaagaaaataaactactt |
17110 |
T |
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| Q |
107 |
catttatannnnnnnnagggaaaataaactacgttatttgattacatttataagcaaatattcaatttttagattctttgaataactaatatatctaaat |
206 |
Q |
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| T |
17109 |
catttatattttttttagggaaaataaactacgttatttgattacatttataagcaaatattcaatttttagattctttgaataactaatatatctaaat |
17010 |
T |
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| Q |
207 |
atatcgtagtcaagatacatttttagaaagaatcatagtcaagatacataaacttgaaaaaatta |
271 |
Q |
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| T |
17009 |
atatcgtagtcaagatacatttttagaaagaatcatagtcaagatacataaacttgaaaaaatta |
16945 |
T |
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Back To:
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 31635871 - 31635823
Alignment:
| Q |
155 |
tataagcaaatattcaatttttagattctttgaataactaatatatcta |
203 |
Q |
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|||||||||| |||| ||||||||| | |||||||||||||||||||| |
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| T |
31635871 |
tataagcaaaatttcactttttagatacattgaataactaatatatcta |
31635823 |
T |
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