View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9493H-LTR4-TNT-insertion-3 (Length: 522)
Name: F9493H-LTR4-TNT-insertion-3
Description: F9493H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9493H-LTR4-TNT-insertion-3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 406
Target Start/End: Complemental strand, 4192585 - 4192187
Alignment:
| Q |
8 |
cttcatccatcgatacccaaatgaaaaagatttgatttttctatctcaatgaagaaacccagatgaaaatagctttgcagaatgcatttctgcatcaaac |
107 |
Q |
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| T |
4192585 |
cttcatccatcaatacccaaatgaaaaagatttgatttttctatctcaatgaagaaacccagatgaaaatagctttgcagaatgcatttctgcatcaaac |
4192486 |
T |
|
| Q |
108 |
ccagaaattataaagatttgatttttcttcctcaatgaagaaagccatatgaaaataatgttgcagaatgcaattttgcatcaaacccagaaattaaata |
207 |
Q |
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| T |
4192485 |
ccagaaattataaagatttgatttttcttcctcaatgaagaaagccatatgaaaataatgttgcagaatgcaattttgcatcaaacccagaaattaaata |
4192386 |
T |
|
| Q |
208 |
caccacaaaattttaaacaatgacaacaatgtaggaaatcaaatcaaaatgttgaaaccaaacacaagactgaatttttatgnnnnnnnctaatgttgtt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4192385 |
caccacaaaattttaaacaatgacaacaatgtaggaaatcaaatcaaaatgttgaaaccaaacacaagactgaatttttatgtttttttctaatgttgtt |
4192286 |
T |
|
| Q |
308 |
gtgtgtaacaataatggaatgtgtttagattgtgaaggagacaatgttgttgttgtgattgacgaggaaaccaaaacgtttctttggaaccaatggaaa |
406 |
Q |
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| T |
4192285 |
gtgtgtaacaataatggaatgtgtttagattgtgaaggagacaatgttgttgttgtgattgacgaggaaaccaaaacgtttctttggaaccaatggaaa |
4192187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 19005568 - 19005532
Alignment:
| Q |
327 |
tgtgtttagattgtgaaggagacaatgttgttgttgt |
363 |
Q |
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|||||||||||| | |||||||||||||||||||||| |
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| T |
19005568 |
tgtgtttagattctcaaggagacaatgttgttgttgt |
19005532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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