View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9498H-LTR4-TNT-insertion-1 (Length: 576)
Name: F9498H-LTR4-TNT-insertion-1
Description: F9498H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9498H-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 561; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 7 - 567
Target Start/End: Complemental strand, 27690924 - 27690364
Alignment:
| Q |
7 |
agtattggtctcattcttcttgctggtgatattaagctttcaatgatcggtggatttggctacctcacttgagtttttgccccaacaaataattattagc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27690924 |
agtattggtctcattcttcttgctggtgatattaagctttcaatgatcggtggatttggctacctcacttgagtttttgccccaacaaataattattagc |
27690825 |
T |
|
| Q |
107 |
cctgatctataaattcaatttatatgtttgataagaatattgatgtcagactttctttacattgtgaaataaactgcaatgctgatggatgtgtacattg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27690824 |
cctgatctataaattcaatttatatgtttgataagaatattgatgtcagactttctttacattgtgaaataaactgcaatgctgatggatgtgtacattg |
27690725 |
T |
|
| Q |
207 |
aaagtgtaattagaaatgttaagaccgtagttcattggttcatatctatacattttaaaataattttagacatatttttacagcatttgctaacatggat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27690724 |
aaagtgtaattagaaatgttaagaccgtagttcattggttcatatctatacattttaaaataattttagacatatttttacagcatttgctaacatggat |
27690625 |
T |
|
| Q |
307 |
ttcaatgtatccatcaatatatgccaagctaactaactttattgtgtgtacgcaatttctctcatggctttggatgctattgatccaaagcggcactaca |
406 |
Q |
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| T |
27690624 |
ttcaatgtatccatcaatatatgccaagctaactaactttattgtgtgtacgcaatttctctcatggctttggatgctattgatccaaagcggcactaca |
27690525 |
T |
|
| Q |
407 |
agaagagtggttcaaaatcaaaggctcttccaaactactttcaggcaagttcggtgctgttgtgcgtcccatcaaaatttgatttctgttcaacatcttt |
506 |
Q |
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| T |
27690524 |
agaagagtggttcaaaatcaaaggctcttccaaactactttcaggcaagttcggtgctgttgtgcgtcccatcaaaatttgatttctgttcaacatcttt |
27690425 |
T |
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| Q |
507 |
tacctttttgttgtgatttgaatatgatcaggtgggaacaatggtaggaaagaatcaattg |
567 |
Q |
| |
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| T |
27690424 |
tacctttttgttgtgatttgaatatgatcaggtgggaacaatggtaggaaagaatcaattg |
27690364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 150 - 353
Target Start/End: Original strand, 34577989 - 34578194
Alignment:
| Q |
150 |
tgtcagactttctttacattgtgaaataaactgcaatgctgatggatgtgtacattgaaagtgtaattagaaatgttaagaccgtag-ttcattggttca |
248 |
Q |
| |
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|||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||||| ||||||| | |||||||||||||| ||| |||||||||||| |
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| T |
34577989 |
tgtcagactttcctgacattgtgaaataaactacaatgctgatggatgtgtaaattgagagtgtaacttgaaatgttaagaccataggttcattggttca |
34578088 |
T |
|
| Q |
249 |
tatctata-cattttaaaataattttagacatatttttacagcatttgctaacatggatttcaatgtatccatcaatatatgccaagctaactaacttta |
347 |
Q |
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| |||||| ||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |||| ||| |||||||| | || |
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| T |
34578089 |
tgtctataacattttaaaataattatagacatatttatacagtatttgctaacatggatttcaatgtattcatcaatttatgtcaaactaactaattgta |
34578188 |
T |
|
| Q |
348 |
ttgtgt |
353 |
Q |
| |
|
|||||| |
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| T |
34578189 |
ttgtgt |
34578194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 494 - 546
Target Start/End: Original strand, 34578295 - 34578348
Alignment:
| Q |
494 |
gttcaacatctttta-cctttttgttgtgatttgaatatgatcaggtgggaaca |
546 |
Q |
| |
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|||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
34578295 |
gttcaacatcctttaacctttttgttgtgatttgaatatgagcaggtgggaaca |
34578348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 378 - 421
Target Start/End: Original strand, 34578257 - 34578300
Alignment:
| Q |
378 |
ggatgctattgatccaaagcggcactacaagaagagtggttcaa |
421 |
Q |
| |
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|||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
34578257 |
ggatgctattgatccaaagcagcactacaaaaagagtggttcaa |
34578300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 8e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 378 - 554
Target Start/End: Original strand, 35085095 - 35085273
Alignment:
| Q |
378 |
ggatgctattgatccaaagcggcactacaagaagagtggttcaaaatcaaaggctcttccaaactactttcaggcaagttcggtgctgttgtgcgtccca |
477 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||| |||||||| |
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| T |
35085095 |
ggatgctattgatccaaagcggcactacaagaagagtggttcaaaatcaaaggctcttccaaagtactttcaggcaagttcagagttgttgagcgtccca |
35085194 |
T |
|
| Q |
478 |
tcaaaatttgatttctgttcaacatctttt--acctttttgttgtgatttgaatatgatcaggtgggaacaatggtagg |
554 |
Q |
| |
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| T |
35085195 |
tcaaaatttgatttctgttcaacatctttttaacctttttgttgtgatttgaatatgatcaggtgggaacaatggtagg |
35085273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 5 - 376
Target Start/End: Original strand, 35084690 - 35085034
Alignment:
| Q |
5 |
acagtattggtctcattcttcttgctggtgatattaagctttcaatgatcggtggatttggctacctcacttgagtttttgccccaacaaataattatta |
104 |
Q |
| |
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|||| ||||||||||| ||||||||||| ||||||||| ||||||||||| |||||||||||||| |||| |||||||||||| |
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| T |
35084690 |
acagcattggtctcatgcttcttgctggagatattaagttttcaatgatccgtggatttggctacttcacccgagtttttgccc---------------- |
35084773 |
T |
|
| Q |
105 |
gccctgatctataaattcaatttatatgtttgataagaatattgatgtcagactttctttacattgtgaaataaactgcaatgctgatggatgtgtacat |
204 |
Q |
| |
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||||||||||||| |||||||||||| | || || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
35084774 |
----tgatctataaattgaatttatatgttggtta-gagtattgatgtcagactttcttgacattgtgaaataaactacaatgctgatggatgtgtacat |
35084868 |
T |
|
| Q |
205 |
tgaaagtgtaattagaaatgttaagaccgtagttcattggttcatatctat-acattttaaaataattttagacatatttttacagcatttgctaacatg |
303 |
Q |
| |
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|||| ||||||| ||||||| ||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||||| | ||||||||||||| |
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| T |
35084869 |
tgaa---gtaattataaatgtt---accatagttcattggttcatttctataacattttaaaataa--ttagacatatttttactgtatttgctaacatg |
35084960 |
T |
|
| Q |
304 |
gatttcaatgtatccatcaatatatgccaa---gctaactaactttattgtgtgtacgcaatttctctcatggctt |
376 |
Q |
| |
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|||| ||||||||||| |||| |||| ||| |||||||| |||| | ||||||| | |||||||||||||||| |
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|
| T |
35084961 |
gattccaatgtatccaacaatttatgtcaatttgctaactagctttgt--tgtgtacaccatttctctcatggctt |
35085034 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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