View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9516H-LTR4-TNT-insertion-1 (Length: 312)
Name: F9516H-LTR4-TNT-insertion-1
Description: F9516H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9516H-LTR4-TNT-insertion-1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 10 - 302
Target Start/End: Complemental strand, 10230348 - 10230056
Alignment:
| Q |
10 |
gttcgctgatatacagcttgaaatgaatcctcttggcatgattttcggtggttctccggtgagatcggatccatctaaagtttcaaggatcggaattcta |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10230348 |
gttcgctgatatacagcttgaaatgaatcctcttggcatgattttcggtggttctccggtgagatcggatccatctaaagtttcaaggatcggaattcta |
10230249 |
T |
|
| Q |
110 |
cctcgttatgctaatgacgagtccaagatgaagtggtttgatgttccagggtttaatattatgcatacgataaacgcatgggatgaggaagatgggggaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10230248 |
cctcgttatgctaatgacgagtccaagatgaagtggtttgatgttccagggtttaatattatgcatacgataaacgcatgggatgaggaagatgggggaa |
10230149 |
T |
|
| Q |
210 |
cagtgacattggtagcaacgaatattttgtcagtgcagcatgtgatggagagaatggaccttattcatgccatgattgagaaagtgaggatta |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10230148 |
cagtgacattggtagcaacgaatattttgtcagtgcagcatgtgatggagagaatggaccttattcatgccatgattgagaaagtgaggatta |
10230056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 10 - 302
Target Start/End: Complemental strand, 10239128 - 10238836
Alignment:
| Q |
10 |
gttcgctgatatacagcttgaaatgaatcctcttggcatgattttcggtggttctccggtgagatcggatccatctaaagtttcaaggatcggaattcta |
109 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||| || || |||||||| |||||| ||||||||||||||||| |
|
|
| T |
10239128 |
gttcgctgatatacagcttgaaattaatcctcttgacatgattttcggtggttccccggtaaggtccgatccatcgaaagttccaaggatcggaattcta |
10239029 |
T |
|
| Q |
110 |
cctcgttatgctaatgacgagtccaagatgaagtggtttgatgttccagggtttaatattatgcatacgataaacgcatgggatgaggaagatgggggaa |
209 |
Q |
| |
|
|||||||||||| || ||||||| ||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
10239028 |
cctcgttatgctgataacgagtcgaagatgaagtggtttgatgttcctgggcttaatattatgcatttgataaacgcatgggatgaggaagatgggaaaa |
10238929 |
T |
|
| Q |
210 |
cagtgacattggtagcaacgaatattttgtcagtgcagcatgtgatggagagaatggaccttattcatgccatgattgagaaagtgaggatta |
302 |
Q |
| |
|
|||||||| | || ||| |||||||| | | ||| ||||| ||||||||||| |||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
10238928 |
cagtgacaatagttgcaccgaatattctctgcgtggagcatatgatggagagattggagcttattcatgaaatgattgagaaagtgagaatta |
10238836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 10255484 - 10255670
Alignment:
| Q |
17 |
gatatacagcttgaaatgaatcctcttggcatgattttcggtggttctccggtgagatcggatccatctaaagtttcaaggatcggaattctacctcgtt |
116 |
Q |
| |
|
||||| ||||||| |||||||||||||| |||||||| ||||||||||||||| | || ||||| || || ||||||||||||||||||||||| | | |
|
|
| T |
10255484 |
gatattcagcttggaatgaatcctcttgacatgatttccggtggttctccggtaggttccgatccttcaaaggtttcaaggatcggaattctaccgagat |
10255583 |
T |
|
| Q |
117 |
atgctaatgacgagtccaagatgaagtggtttgatgttccagggtttaatattatgcatacgataaacgcatgggatgaggaagatg |
203 |
Q |
| |
|
|||||| ||| ||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
10255584 |
atgctagtgatgagtcgaagatgaaatggtttgatgtgccagggtttaatattatgcacgcgataaactcatgggatggggaagatg |
10255670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 904 times since January 2019
Visitors: 1113