View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9516H-LTR4-TNT-insertion-2 (Length: 385)
Name: F9516H-LTR4-TNT-insertion-2
Description: F9516H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9516H-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 156 - 375
Target Start/End: Original strand, 4404670 - 4404889
Alignment:
| Q |
156 |
aggggacagtagttgttgtttgagaagagaagaaaagaaaaggtagatgggtgctcctccacgcgaagaagagaaatgtctctctcttggactcattcgt |
255 |
Q |
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| T |
4404670 |
aggggacagtagttgttgtttgagaagagaagaaaagaaaaggtagatgggtgctcctccacgcgaagaagagaaatgtctctctcttggactcattcgt |
4404769 |
T |
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| Q |
256 |
atctatttccaaaacaacgtaaagtaggtgaaaacaatgaactataagaaacaaacatagataaatagtactgcaaacaatactagtggtggtgccacca |
355 |
Q |
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| T |
4404770 |
atctatttccaaaacaacgtaaagtaggtgaaaacaatgaactataagaaacaaacatagataaatagtactgcaaacaatactagtggtggtgccacca |
4404869 |
T |
|
| Q |
356 |
ttgcgttggttttgtgaatt |
375 |
Q |
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| T |
4404870 |
ttgcgttggttttgtgaatt |
4404889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 8 - 141
Target Start/End: Original strand, 2688445 - 2688577
Alignment:
| Q |
8 |
gaataagtttggggggcattataaaatgcaaatcccaccaagacatccaagtccaccaaacattccgagccaaatcacaatggagaaaaagatgagaggt |
107 |
Q |
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| T |
2688445 |
gaataagtttgggg-gcattataaaatgcaaatccaaccaagacatcgaagtcaaccaaacattccgagccaaatcacaatggagaaaaagatgagaggt |
2688543 |
T |
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| Q |
108 |
ggtctctgtgaatgccgaacacccaacacaattg |
141 |
Q |
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| T |
2688544 |
ggtctctgtgaatgccgaacacccaacacaattg |
2688577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 22197028 - 22196943
Alignment:
| Q |
22 |
ggcattataaaatgcaaatcccaccaagacatccaagtccaccaaacattccgagccaaatcacaatggagaaaaagatgagaggt |
107 |
Q |
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| T |
22197028 |
ggcattataaaattcaaatccaaacaagacatcaaactcaaccaaacattccgggccaaatcacaatgaaggaaaagatgtgaggt |
22196943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 22240793 - 22240878
Alignment:
| Q |
22 |
ggcattataaaatgcaaatcccaccaagacatccaagtccaccaaacattccgagccaaatcacaatggagaaaaagatgagaggt |
107 |
Q |
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| T |
22240793 |
ggcattataaaattcaaatccaaacaagacatcaaactcaaccaaacattccgggccaaatcacaatgaaggaaaagatgtgaggt |
22240878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 20794373 - 20794288
Alignment:
| Q |
22 |
ggcattataaaatgcaaatcccaccaagacatccaagtccaccaaacattccgagccaaatcacaatggagaaaaagatgagaggt |
107 |
Q |
| |
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||||||||||||| ||||||| ||||||||||| || || ||||||||||||| |||||||||||||| || || ||||| ||||| |
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| T |
20794373 |
ggcattataaaattcaaatccaaccaagacatcaaactcaaccaaacattccgggccaaatcacaatgaaggaagagatgtgaggt |
20794288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 41788405 - 41788458
Alignment:
| Q |
157 |
ggggacagtagttgttgtttgagaagagaagaaaagaaaaggtagatgggtgct |
210 |
Q |
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| T |
41788405 |
ggggacagtaggttttgtttgtgaagagaagagaagaaaaggtagataggtgct |
41788458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 42773923 - 42773999
Alignment:
| Q |
30 |
aaaatgcaaatcccaccaagacatccaagtccaccaaacattccgagccaaatcacaatggagaaaaagatgagagg |
106 |
Q |
| |
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||||||||| ||| ||||||||||| || || |||||| ||||| |||||||| ||||| ||||| ||||| |||| |
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| T |
42773923 |
aaaatgcaagtccaaccaagacatcaaactcaaccaaatattccacgccaaatcgcaatgaagaaagagatgggagg |
42773999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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