View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9516H-LTR4-TNT-insertion-4 (Length: 197)
Name: F9516H-LTR4-TNT-insertion-4
Description: F9516H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9516H-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 5e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 2688447 - 2688577
Alignment:
| Q |
10 |
ataagtttggggggcattataaaatgcaaatccaaccaagacatcgaagtcaaccaaacattccgagccaaatcacaatggagaaaaagatgagaggtgg |
109 |
Q |
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| T |
2688447 |
ataagtttgggg-gcattataaaatgcaaatccaaccaagacatcgaagtcaaccaaacattccgagccaaatcacaatggagaaaaagatgagaggtgg |
2688545 |
T |
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| Q |
110 |
tctctgtgaatgccgaacacccaacacaattg |
141 |
Q |
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| T |
2688546 |
tctctgtgaatgccgaacacccaacacaattg |
2688577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 22197028 - 22196943
Alignment:
| Q |
22 |
ggcattataaaatgcaaatccaaccaagacatcgaagtcaaccaaacattccgagccaaatcacaatggagaaaaagatgagaggt |
107 |
Q |
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| T |
22197028 |
ggcattataaaattcaaatccaaacaagacatcaaactcaaccaaacattccgggccaaatcacaatgaaggaaaagatgtgaggt |
22196943 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 22240793 - 22240878
Alignment:
| Q |
22 |
ggcattataaaatgcaaatccaaccaagacatcgaagtcaaccaaacattccgagccaaatcacaatggagaaaaagatgagaggt |
107 |
Q |
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| T |
22240793 |
ggcattataaaattcaaatccaaacaagacatcaaactcaaccaaacattccgggccaaatcacaatgaaggaaaagatgtgaggt |
22240878 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 20794373 - 20794288
Alignment:
| Q |
22 |
ggcattataaaatgcaaatccaaccaagacatcgaagtcaaccaaacattccgagccaaatcacaatggagaaaaagatgagaggt |
107 |
Q |
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| T |
20794373 |
ggcattataaaattcaaatccaaccaagacatcaaactcaaccaaacattccgggccaaatcacaatgaaggaagagatgtgaggt |
20794288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 42773923 - 42773999
Alignment:
| Q |
30 |
aaaatgcaaatccaaccaagacatcgaagtcaaccaaacattccgagccaaatcacaatggagaaaaagatgagagg |
106 |
Q |
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||||||||| ||||||||||||||| || ||||||||| ||||| |||||||| ||||| ||||| ||||| |||| |
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| T |
42773923 |
aaaatgcaagtccaaccaagacatcaaactcaaccaaatattccacgccaaatcgcaatgaagaaagagatgggagg |
42773999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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