View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9516H-LTR4-TNT-insertion-6 (Length: 444)
Name: F9516H-LTR4-TNT-insertion-6
Description: F9516H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9516H-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Original strand, 35586928 - 35587354
Alignment:
| Q |
8 |
gattctccccatctaccacagcccccaagatcatcgtatgtttattgaaaaaccatggnnnnnnnacttagcacctttcggacatctagcttatggaaaa |
107 |
Q |
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| T |
35586928 |
gattctccccatctaccacagcccccaagatcatcgtatgtttattgaaaaaccatggcccccccacttagcacctttcggacatctagcttatggaaaa |
35587027 |
T |
|
| Q |
108 |
agtgaaagatataaacccccatcttgatctcttttatctctacacctttcaccagtgaccagatacccttcatattatccttcattaaatgcgttatgac |
207 |
Q |
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| T |
35587028 |
agtgaaagatataaacccccatcttgatctcttttatctctacacctttcaccagtgaccagatacccttcatattatccttcattaaatgcgttatgac |
35587127 |
T |
|
| Q |
208 |
ttgtttgtttgttaagaatctcctaatcagacacaatgttggatcgaaacctcctcaataccaattcttcctccgatatttcaatctcatattcttctcc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35587128 |
ttgtttgtttgttaagaatctcctaatcagacacaatgttggatcgaaacctcctcaataccaattcttcctccgatatttcaatctcatattcttctcc |
35587227 |
T |
|
| Q |
308 |
tctaaatgtaggttatccatgattttttgttaaattggatgaaaacttatacgaaaatgataagctatcaagtgcttgtaatgatctcactctaagaaaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35587228 |
tctaaatgtaggttatccatgattttttgttaaattggatgaaaacttatacgaaaatgataagctatcaagtgcttgtaatgatctcactctaagaaaa |
35587327 |
T |
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| Q |
408 |
ctctctattttggtaaacaatggaatt |
434 |
Q |
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||||||||||||||||||||||||||| |
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| T |
35587328 |
ctctctattttggtaaacaatggaatt |
35587354 |
T |
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