View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9531H-LTR4-TNT-insertion-10 (Length: 400)
Name: F9531H-LTR4-TNT-insertion-10
Description: F9531H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9531H-LTR4-TNT-insertion-10 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 10 - 391
Target Start/End: Original strand, 32998154 - 32998535
Alignment:
| Q |
10 |
atgttcatgagcagatcgcttctttgccgagttgtcatgatctacataatgccataattcataatatgttattatgtgtcacaataatatagccaatgtc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32998154 |
atgttcatgagcagatcgcttctttgccgagttgtcatgatctacataatgccataattcataatatgttattatgtgtcacaataatatagccaatgtc |
32998253 |
T |
|
| Q |
110 |
gtgggaaaaatacttatgcatataaatttgcaacgctaaaaatagagcattattttaagcatttaagatacatcataattgttctctaggagactcttga |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32998254 |
gtgggaaaaatacttatgcatataaatttgcaacgctaaaaatagagcattattttaagcatttaagatacatcataattgttctctaggagactcttga |
32998353 |
T |
|
| Q |
210 |
tgatattcggatttcacgcagttagggattctccgcattcatgcagttgggacatcagtagtcgttcatcaagatcagagggtnnnnnnntgcatatttg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32998354 |
tgatattcggatttcacgcagttagggattctccgcattcatgcagttgggacatcagtagtcgttcatcaagatcagagggtaaaaaaatgcatatttg |
32998453 |
T |
|
| Q |
310 |
annnnnnnnnnnattaattcaaaatagcgaggttaaatctaaaccgtccgatcatgattgaacgcccacattgtcccaattg |
391 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32998454 |
atttttttttttattaattcaaaatagcgaggttaaatctaaaccgtccgatcatgattgaacgcccacattgtcccaattg |
32998535 |
T |
|
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