View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9531H-LTR4-TNT-insertion-11 (Length: 79)
Name: F9531H-LTR4-TNT-insertion-11
Description: F9531H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9531H-LTR4-TNT-insertion-11 |
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Alignment Details
Target: chr1 (Bit Score: 62; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-27
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 48473050 - 48472989
Alignment:
| Q |
8 |
aaagtcaatgctataatcctgaaaacaatttcatagaatttaacagcagaaaattaagaatt |
69 |
Q |
| |
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| T |
48473050 |
aaagtcaatgctataatcctgaaaacaatttcatagaatttaacagcagaaaattaagaatt |
48472989 |
T |
|
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