View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9531H-LTR4-TNT-insertion-12 (Length: 391)
Name: F9531H-LTR4-TNT-insertion-12
Description: F9531H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9531H-LTR4-TNT-insertion-12 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 381
Target Start/End: Complemental strand, 16294953 - 16294580
Alignment:
| Q |
8 |
ctaatcctctatgatccgatgtcatcgagtatgacgtaggttgttcttcatgttgtcttgaaaaagaaaaacgtcttcctctatcaagatcaatattgtt |
107 |
Q |
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| T |
16294953 |
ctaatcctctatgatccgatgtcatcgagtatgacgtagattgttcttcatgttgtcttgaaaaagaaaaacgtcttcctctatcaagatcaatattgtt |
16294854 |
T |
|
| Q |
108 |
ccaattgaagcagcatttgataacaaaggtgtagtatgccattagcaagaaagatgttaccatcattcctactacaatgattactattggaaaatttgta |
207 |
Q |
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| T |
16294853 |
ccaattgaagcagcatttgataacaaaggtgtagtatgccattagcaagaaagatgttaccatcattcctactacaatgattactattggaaaatttgta |
16294754 |
T |
|
| Q |
208 |
ctagaatcatgatgattttggataggtggatgagcttgtgacacaggatagatgatcaagtgatgttgtttgttaacaaaattcatactagattctagag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16294753 |
ctagaatcatgatgattttggataggtggatgagcttgtgacacaggatagatgatcaagtgatgttgtttgttaacaaaattcatactagattctagag |
16294654 |
T |
|
| Q |
308 |
ataaaatggttgtcttagatgaagaaatggtacttttcctttgaagatttatttatagtgtgatgaatgcatta |
381 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16294653 |
ataaaatggttgtcttagatgaagaaatggtacttttcctttgaagatttatttatagtgtgatgaatgcatta |
16294580 |
T |
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