View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9531H-LTR4-TNT-insertion-15 (Length: 402)
Name: F9531H-LTR4-TNT-insertion-15
Description: F9531H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9531H-LTR4-TNT-insertion-15 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 8 - 393
Target Start/End: Original strand, 23862183 - 23862568
Alignment:
| Q |
8 |
tcaccaacactcttccaaatcttacacctctctcgttttttatctggatctgcgtccttgttatctgccacccccgccgcaatcgttttcgatgtcagat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23862183 |
tcaccaacactcttccaaatcttacacctctctcgttttttatctggatctgcgtccttgttatctgccacccccgccgcaatcgttttcgatgtcagat |
23862282 |
T |
|
| Q |
108 |
ctccttttcaaacgaagccataatggtcgatgttgtgtgcttgtgttgttcatgttactttgattttatggnnnnnnnnnnnnnattggctgttgattcc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23862283 |
ctccttttcaaacgaagccataatggtcgatgttgtgtgcttgtgttgttcatgttactttgattttatggtttttttgtttttattggctgttgattcc |
23862382 |
T |
|
| Q |
208 |
atgaagcttctgtgatttttctttaaatctaaaatcaattannnnnnnnnnnnnnnnnnnagtgaatttaaaatcaattcaataaaaatcaatgaagaaa |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23862383 |
atgaagcttctgtgatttttctttaaatctaaaatcaattatttttgttttagtttttttagtgaatttaaaatcaattcaataaaaatcaatgaagaaa |
23862482 |
T |
|
| Q |
308 |
gtgtttgattcaactgatttacggaagtttatacatggagtcatcttcatgttggtacttgttttgagaagacatggattcaattg |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23862483 |
gtgtttgattcaactgatttacggaagtttatacatggagtcatcttcatgttggtacttgttttgagaagacatggattcaattg |
23862568 |
T |
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