View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9531H-LTR4-TNT-insertion-16 (Length: 119)
Name: F9531H-LTR4-TNT-insertion-16
Description: F9531H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9531H-LTR4-TNT-insertion-16 |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 4e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 4e-48
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 27334347 - 27334447
Alignment:
| Q |
9 |
agatgaacgcaaagaagaaagatcagccactaatgcaaagtataacgaacgagattgaacaatatgactatccagctgtgaagtttgtgatgatgagatt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27334347 |
agatgaacgcaaagaagaaagatcagccactaatgcaaggtataacgaacgagattgaacaatatgactatccagctgtgaagtttgtgatgatgagatt |
27334446 |
T |
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| Q |
109 |
a |
109 |
Q |
| |
|
| |
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| T |
27334447 |
a |
27334447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 3e-39
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 18734620 - 18734522
Alignment:
| Q |
9 |
agatgaacgcaaagaagaaagatcagccactaatgcaaagtataacgaacgagattgaacaatatgactatccagctgtgaagtttgtgatgatgagatt |
108 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18734620 |
agatgaacgcaaagaagaaagatcagccactcatgcaaggtataacgaacgagattgaaca--atgactatccagctgtgaagtttgtgatgatgagatt |
18734523 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 3e-39
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 27364268 - 27364366
Alignment:
| Q |
9 |
agatgaacgcaaagaagaaagatcagccactaatgcaaagtataacgaacgagattgaacaatatgactatccagctgtgaagtttgtgatgatgagatt |
108 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27364268 |
agatgaacgcaaagaagaaagatcagccactcatgcaaggtataacgaacgagattgaaca--atgactatccagctgtgaagtttgtgatgatgagatt |
27364365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 93; Significance: 9e-46; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 93; E-Value: 9e-46
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 87758 - 87658
Alignment:
| Q |
9 |
agatgaacgcaaagaagaaagatcagccactaatgcaaagtataacgaacgagattgaacaatatgactatccagctgtgaagtttgtgatgatgagatt |
108 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87758 |
agatgaacgcaaagaagaaagatcagccactcatgcaaggtataacgaacgagattgaacaatatgactatccagctgtgaagtttgtgatgatgagatt |
87659 |
T |
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| Q |
109 |
a |
109 |
Q |
| |
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| T |
87658 |
a |
87658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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