View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9531H-LTR4-TNT-insertion-18 (Length: 480)

Name: F9531H-LTR4-TNT-insertion-18
Description: F9531H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9531H-LTR4-TNT-insertion-18
F9531H-LTR4-TNT-insertion-18
[»] chr4 (21 HSPs)
chr4 (8-356)||(48160158-48160506)
chr4 (96-353)||(48155327-48155578)
chr4 (156-269)||(48169623-48169736)
chr4 (426-471)||(26957301-26957346)
chr4 (426-471)||(48160576-48160621)
chr4 (426-471)||(48166795-48166840)
chr4 (426-471)||(6257702-6257747)
chr4 (426-471)||(10733847-10733892)
chr4 (426-471)||(10739834-10739879)
chr4 (426-471)||(10947616-10947661)
chr4 (426-471)||(10953603-10953648)
chr4 (426-471)||(26972052-26972097)
chr4 (426-471)||(33461812-33461857)
chr4 (426-471)||(24287604-24287649)
chr4 (426-471)||(33458687-33458732)
chr4 (193-269)||(48155165-48155242)
chr4 (432-471)||(50168218-50168257)
chr4 (428-470)||(44832113-44832155)
chr4 (426-471)||(17627272-17627317)
chr4 (192-269)||(48145315-48145391)
chr4 (432-470)||(35177413-35177451)
[»] chr6 (13 HSPs)
chr6 (108-356)||(14197012-14197257)
chr6 (49-117)||(14196546-14196614)
chr6 (426-471)||(8651301-8651346)
chr6 (426-471)||(4580819-4580864)
chr6 (426-471)||(21771062-21771107)
chr6 (426-471)||(25343244-25343289)
chr6 (426-471)||(25353830-25353875)
chr6 (426-471)||(17581221-17581266)
chr6 (426-471)||(30906078-30906123)
chr6 (426-470)||(21191369-21191413)
chr6 (426-471)||(21783823-21783868)
chr6 (426-470)||(21197540-21197584)
chr6 (426-471)||(6096927-6096972)
[»] chr8 (15 HSPs)
chr8 (426-471)||(39727782-39727827)
chr8 (426-471)||(10705455-10705500)
chr8 (426-471)||(32890505-32890550)
chr8 (426-471)||(32896629-32896674)
chr8 (426-471)||(36818589-36818634)
chr8 (426-471)||(39736036-39736081)
chr8 (426-469)||(22220227-22220270)
chr8 (432-471)||(42033420-42033459)
chr8 (428-470)||(1883336-1883378)
chr8 (426-471)||(10699646-10699691)
chr8 (426-470)||(5542660-5542704)
chr8 (427-471)||(42993497-42993541)
chr8 (426-471)||(14417578-14417623)
chr8 (426-471)||(9934900-9934945)
chr8 (426-470)||(17954123-17954167)
[»] chr7 (13 HSPs)
chr7 (426-471)||(351404-351449)
chr7 (426-471)||(3811666-3811711)
chr7 (429-471)||(3817808-3817850)
chr7 (428-470)||(35148507-35148549)
chr7 (426-471)||(338998-339043)
chr7 (426-471)||(28421456-28421501)
chr7 (426-471)||(35153026-35153071)
chr7 (426-471)||(5849147-5849192)
chr7 (426-471)||(26383286-26383331)
chr7 (426-470)||(5979675-5979719)
chr7 (429-468)||(22742430-22742469)
chr7 (429-471)||(8824431-8824473)
chr7 (427-471)||(7608066-7608110)
[»] chr3 (23 HSPs)
chr3 (426-471)||(10761148-10761193)
chr3 (426-471)||(10769467-10769512)
chr3 (426-471)||(23138914-23138959)
chr3 (426-471)||(30051598-30051643)
chr3 (426-471)||(38449561-38449606)
chr3 (426-471)||(38456048-38456093)
chr3 (426-471)||(8331404-8331449)
chr3 (426-471)||(9586510-9586555)
chr3 (426-471)||(10238710-10238755)
chr3 (426-471)||(10244832-10244877)
chr3 (426-471)||(11840223-11840268)
chr3 (426-471)||(26429915-26429960)
chr3 (426-471)||(28964497-28964542)
chr3 (426-471)||(42191718-42191763)
chr3 (426-471)||(42197660-42197705)
chr3 (426-471)||(49151229-49151274)
chr3 (426-471)||(49157296-49157341)
chr3 (426-471)||(17056289-17056334)
chr3 (426-470)||(11846476-11846520)
chr3 (427-471)||(53071749-53071793)
chr3 (426-471)||(24643988-24644033)
chr3 (426-470)||(55003900-55003944)
chr3 (426-471)||(34300055-34300100)
[»] chr2 (17 HSPs)
chr2 (426-471)||(13150187-13150232)
chr2 (426-471)||(30964944-30964989)
chr2 (426-471)||(13455716-13455761)
chr2 (426-471)||(13461657-13461702)
chr2 (426-471)||(28683442-28683487)
chr2 (426-471)||(31001993-31002038)
chr2 (426-471)||(35085177-35085222)
chr2 (426-471)||(36750031-36750076)
chr2 (426-471)||(44717303-44717348)
chr2 (433-471)||(7771684-7771722)
chr2 (426-471)||(35091150-35091195)
chr2 (426-471)||(35439868-35439913)
chr2 (426-471)||(35442330-35442375)
chr2 (426-470)||(23283860-23283904)
chr2 (440-471)||(31007985-31008016)
chr2 (426-471)||(19879211-19879256)
chr2 (426-470)||(23343180-23343224)
[»] chr1 (14 HSPs)
chr1 (426-471)||(31051161-31051206)
chr1 (426-471)||(31057661-31057706)
chr1 (426-471)||(1077861-1077906)
chr1 (426-471)||(25275544-25275589)
chr1 (426-471)||(25382033-25382078)
chr1 (426-471)||(44409617-44409662)
chr1 (426-471)||(50305814-50305859)
chr1 (426-471)||(34739603-34739648)
chr1 (426-470)||(12184095-12184139)
chr1 (426-471)||(25388000-25388045)
chr1 (428-471)||(8093343-8093386)
chr1 (426-471)||(27954778-27954823)
chr1 (426-470)||(24927267-24927311)
chr1 (431-471)||(38152455-38152495)
[»] scaffold0440 (1 HSPs)
scaffold0440 (426-471)||(1685-1730)
[»] scaffold0208 (2 HSPs)
scaffold0208 (426-471)||(12012-12057)
scaffold0208 (426-470)||(6139-6183)
[»] chr5 (12 HSPs)
chr5 (426-471)||(12686676-12686721)
chr5 (426-471)||(12692778-12692823)
chr5 (426-471)||(28525883-28525928)
chr5 (426-471)||(28531979-28532024)
chr5 (426-471)||(32097519-32097564)
chr5 (426-471)||(41296896-41296941)
chr5 (426-471)||(7390045-7390090)
chr5 (426-471)||(32094719-32094764)
chr5 (431-471)||(20499760-20499800)
chr5 (430-471)||(14609752-14609793)
chr5 (426-467)||(30384885-30384926)
chr5 (426-459)||(30771900-30771933)
[»] scaffold0012 (1 HSPs)
scaffold0012 (426-471)||(173387-173432)
[»] scaffold0363 (1 HSPs)
scaffold0363 (426-471)||(1096-1141)
[»] scaffold0449 (1 HSPs)
scaffold0449 (431-466)||(1281-1316)
[»] scaffold0064 (1 HSPs)
scaffold0064 (426-469)||(13890-13933)
[»] scaffold1114 (1 HSPs)
scaffold1114 (426-471)||(680-725)


Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 8 - 356
Target Start/End: Original strand, 48160158 - 48160506
Alignment:
Q  8 ctaataccttattagttttaggaatatagaaaagaagcagagaggggaaattgaaaggatcctaataggaaacaaatggatttctttttcttttactgca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48160158 ctaataccttattagttttaggaatatagaaaagaagcagagaggggaaattgaaaggatcctaataggaaacaaatggatttctttttcttttactgca 48160257  T
Q  108 ttaatttcaaatcaaaaaagaggaagaggaaaattttgtgggagaagggtgtcatctcatctttatgaagccataacacttgtgaagcatattttaagaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48160258 ttaatttcaaatcaaaaaagaggaagaggaaaattttgtgggagaagggtgtcatctcatctttatgaagccataacacttgtgaagcatattttaagaa 48160357  T
Q  208 aaatctagtgcaatgaatctagaacaggttgcagattttgcaatttttaggggaaattaaaaactgtaacagtaaagcataattgaaattaataagacaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48160358 aaatctagtgcaatgaatctagaacaggttgcagattttgcaatttttaggggaaattaaaaactgtaacagtaaagcataattgaaattaataagacaa 48160457  T
Q  308 acacctttagcagatttggtaatcttgatcaacatgcataaactcatca 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48160458 acacctttagcagatttggtaatcttgatcaacatgcataaactcatca 48160506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 96 - 353
Target Start/End: Original strand, 48155327 - 48155578
Alignment:
Q  96 tcttttactgcattaatttcaaatcaaaaaagaggaagaggaaaatttt--gtgggag-aagggtgtcatctcatctttatgaagccataacacttgtga 192  Q
    |||||| ||||||||||||||||   ||  |||||||||||||| ||||  ||||| | ||| |||| ||||||||||||||||  ||||||||||  ||    
T  48155327 tcttttgctgcattaatttcaaaatcaagcagaggaagaggaaagttttatgtgggtgtaagcgtgtaatctcatctttatgaaatcataacacttacga 48155426  T
Q  193 agcatattttaagaaaaatctagtgcaatgaatctagaacaggttgcagattttgcaatttttaggggaaattaaaaactgtaacagtaaagcataattg 292  Q
    || ||||||| |||||||||||| ||||||| ||||||||||| |  ||||||  |||||| | |||| ||||||||     |||     |||| | ||     
T  48155427 aggatattttcagaaaaatctagagcaatgactctagaacagg-tctagatttgacaatttgttggggtaattaaaa----caac----tagcacagtta 48155517  T
Q  293 aaattaataagacaaacacctttagcagatttggtaatcttgatcaacatgcataaactca 353  Q
    | ||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||    
T  48155518 acattaataagacaaccacctttagcagatttggtaatcctgaccaacatgcataaactca 48155578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 156 - 269
Target Start/End: Original strand, 48169623 - 48169736
Alignment:
Q  156 gtgtcatctcatctttatgaagccataacacttgtgaagcatattttaagaaaaatctagtgcaatgaatctagaacaggttgcagattttgcaattttt 255  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| ||||||| |||||||||  || |||| || ||| || ||    
T  48169623 gtgtgatctcatctttatgaaaccataacacttatgaagcatatttttagaaaaatctagagcaatgactctagaacaaattccagacttggcacttatt 48169722  T
Q  256 aggggaaattaaaa 269  Q
     |||||||||||||    
T  48169723 tggggaaattaaaa 48169736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 26957346 - 26957301
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  26957346 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 26957301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 48160576 - 48160621
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48160576 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 48160621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 48166795 - 48166840
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48166795 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 48166840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 6257747 - 6257702
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  6257747 gtgggcaaatatcgtaataataattatattagctatttatcaattg 6257702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 10733892 - 10733847
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  10733892 gtgggcaaatatcgtaataataattatattagctatttatcaattg 10733847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 10739879 - 10739834
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  10739879 gtgggcaaatatcgtaataataattatattagctatttatcaattg 10739834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 10947661 - 10947616
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  10947661 gtgggcaaatatcgtaataataattatattagctatttatcaattg 10947616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 10953648 - 10953603
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  10953648 gtgggcaaatatcgtaataataattatattagctatttatcaattg 10953603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 26972097 - 26972052
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  26972097 gtgggcaaatattgtaacaataattatattagctatttatcaattg 26972052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 33461857 - 33461812
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  33461857 gtgggcaattatcgtaacaataattatattagctatttatcaattg 33461812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 24287604 - 24287649
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||    
T  24287604 gtgggcaaatatcgtaataataattatattagctatttataaattg 24287649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 33458732 - 33458687
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||    
T  33458732 gtgggcaattatcgtaacaataattatattaactatttatcaattg 33458687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 48155165 - 48155242
Alignment:
Q  193 agcatattttaagaaa-aatctagtgcaatgaatctagaacaggttgcagattttgcaatttttaggggaaattaaaa 269  Q
    |||||||||| | ||| ||||||| ||||||| ||||||||||||  ||||||| ||||||| |||||||||||||||    
T  48155165 agcatattttcaaaaacaatctagcgcaatgactctagaacaggtaccagatttggcaatttgtaggggaaattaaaa 48155242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 50168218 - 50168257
Alignment:
Q  432 aaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  50168218 aaatatcgtaataataattatattagctatttatcaattg 50168257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 428 - 470
Target Start/End: Complemental strand, 44832155 - 44832113
Alignment:
Q  428 gggcaaatatcgtaacaataattatattagctatttatcaatt 470  Q
    |||||||||| ||||||||||||||||||| ||||||||||||    
T  44832155 gggcaaatattgtaacaataattatattagttatttatcaatt 44832113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 17627317 - 17627272
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||| ||||||||||| ||||||||||||||||||||||| ||||    
T  17627317 gtgggaaaatatcgtaataataattatattagctatttatcgattg 17627272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 192 - 269
Target Start/End: Original strand, 48145315 - 48145391
Alignment:
Q  192 aagcatattttaagaaaaatctagtgcaatgaatctagaacaggttgcagattttgcaatttttaggggaaattaaaa 269  Q
    ||||||||| |||||||||| ||| ||||  | ||||||||| ||| || |||||||||||||| |||||||||||||    
T  48145315 aagcatattataagaaaaatatagagcaaccactctagaacatgttccaaattttgcaattttt-ggggaaattaaaa 48145391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 432 - 470
Target Start/End: Original strand, 35177413 - 35177451
Alignment:
Q  432 aaatatcgtaacaataattatattagctatttatcaatt 470  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  35177413 aaatatcgtaataataattatattagatatttatcaatt 35177451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 108 - 356
Target Start/End: Original strand, 14197012 - 14197257
Alignment:
Q  108 ttaatttcaaatcaaaaaagaggaagaggaaaattttgtgggagaagggtgtcatctcatctttatgaagccataacacttgtgaagcatattttaagaa 207  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14197012 ttaatttcaaatcaaagaagaggaagaggaaaattttgtgggagaagcgtgtcatctcatctttatgaagccataacacttatgaagcatattttaagaa 14197111  T
Q  208 aaatctagtgcaatgaatctagaacaggttgcagattttgcaatttttaggggaaattaaaaactgtaacagtaaagcataattgaaattaataagacaa 307  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    |||||||||||||| ||||||||||||||||||||||||||||||||||     
T  14197112 aaatctagtgcaatgaatctagaacaggtcgcagattttgcaattt---agggaaattaaaaacagtaacagtaaagcataattgaaattaataagacat 14197208  T
Q  308 acacctttagcagatttggtaatcttgatcaacatgcataaactcatca 356  Q
     |||||||||||||||||||||||||||| |||||||||||||||||||    
T  14197209 tcacctttagcagatttggtaatcttgatgaacatgcataaactcatca 14197257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 14196546 - 14196614
Alignment:
Q  49 gaggggaaattgaaaggatcctaataggaaacaaatggatttctttttcttttactgcattaatttcaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14196546 gaggggaaattgaaaggatcctaataggaaacaaatggatttctttttcttttactgcattaatttcaa 14196614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 8651346 - 8651301
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8651346 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 8651301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 4580864 - 4580819
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  4580864 gtgggcaaatatcgtaataataattatattagctatttatcaattg 4580819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 21771107 - 21771062
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  21771107 gtggacaaatatcgtaacaataattatattagctatttatcaattg 21771062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 25343244 - 25343289
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  25343244 gtgggcaaatatcgtaataataattatattagctatttatcaattg 25343289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 25353830 - 25353875
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  25353830 gtgggcaaatatcgtaataataattatattagctatttatcaattg 25353875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 17581221 - 17581266
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||    
T  17581221 gtgggcaaatatcgtaataataattatattaactatttatcaattg 17581266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 30906123 - 30906078
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||    
T  30906123 gtgggcaaatatcgtaataataattatattagttatttatcaattg 30906078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 470
Target Start/End: Complemental strand, 21191413 - 21191369
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaatt 470  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||    
T  21191413 gtgggcaaatatcgtaataataattatattagttatttatcaatt 21191369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 21783868 - 21783823
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  21783868 gtgggtaaatatcgtaataataattatattaactatttatcaattg 21783823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 470
Target Start/End: Complemental strand, 21197584 - 21197540
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaatt 470  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||||    
T  21197584 gtgggtaaatatcgtaataataattatattagttatttatcaatt 21197540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 6096927 - 6096972
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||||||||||| ||||||||||||||||||  ||||| |||||||    
T  6096927 gtgggcaaatatagtaacaataattatattacttatttgtcaattg 6096972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 39727827 - 39727782
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  39727827 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 39727782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 10705455 - 10705500
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  10705455 gtgggcgaatatcgtaacaataattatattagctatttatcaattg 10705500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 32890505 - 32890550
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  32890505 gtgggcaaatatcgtaataataattatattagctatttatcaattg 32890550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 32896629 - 32896674
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  32896629 gtgggcaaatatcgtaataataattatattagctatttatcaattg 32896674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 36818589 - 36818634
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  36818589 gtgggcaaatatcgtaataataattatattagctatttatcaattg 36818634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 39736081 - 39736036
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  39736081 gtggacaaatatcgtaacaataattatattagctatttatcaattg 39736036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 469
Target Start/End: Complemental strand, 22220270 - 22220227
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaat 469  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  22220270 gtgggcaaatatcgtaacaatagttatattagctatttatcaat 22220227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 42033420 - 42033459
Alignment:
Q  432 aaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42033420 aaatatcgtaacaataattatattagctatttatcaattg 42033459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 428 - 470
Target Start/End: Complemental strand, 1883378 - 1883336
Alignment:
Q  428 gggcaaatatcgtaacaataattatattagctatttatcaatt 470  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  1883378 gggcaaatatcgtaataataattatattagctatttatcaatt 1883336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 10699646 - 10699691
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||    
T  10699646 gtgggcaaatatcgtaacaataattatactagttatttatcaattg 10699691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 470
Target Start/End: Complemental strand, 5542704 - 5542660
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaatt 470  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||    
T  5542704 gtgggcaaatatcgtaataataattatattagttatttatcaatt 5542660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 42993541 - 42993497
Alignment:
Q  427 tgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||||||||||||||| |||||||||||||| |||||||||||||    
T  42993541 tgggcaaatatcgtaataataattatattagttatttatcaattg 42993497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 14417578 - 14417623
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||| ||||||||||| |||||||||||||| |||||||||||||    
T  14417578 gtgggaaaatatcgtaataataattatattagttatttatcaattg 14417623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 9934900 - 9934945
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||| |||||| |||| |||||||||||||| |||||||||||||    
T  9934900 gtgggtaaatattgtaataataattatattagttatttatcaattg 9934945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 470
Target Start/End: Original strand, 17954123 - 17954167
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaatt 470  Q
    ||||| ||||||| | | |||||||||||||||||||||||||||    
T  17954123 gtgggaaaatatctttataataattatattagctatttatcaatt 17954167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 351404 - 351449
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  351404 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 351449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 3811711 - 3811666
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3811711 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 3811666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 429 - 471
Target Start/End: Complemental strand, 3817850 - 3817808
Alignment:
Q  429 ggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3817850 ggcaaatatcgtaacaataattatattagctatttatcaattg 3817808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 428 - 470
Target Start/End: Complemental strand, 35148549 - 35148507
Alignment:
Q  428 gggcaaatatcgtaacaataattatattagctatttatcaatt 470  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35148549 gggcaaatatcgtaacaataattatattagctatttatcaatt 35148507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 338998 - 339043
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  338998 gtgggcaaatatcataacaataattatattagctatttatcaattg 339043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 28421501 - 28421456
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  28421501 gtgggcaaatatcgtaataataattatattagctatttatcaattg 28421456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 35153071 - 35153026
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  35153071 gtgggcaaatatcgtaacaataattatattagatatttatcaattg 35153026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 5849147 - 5849192
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||    
T  5849147 gtgggtaaatatcgtaacaataattatattagttatttatcaattg 5849192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 26383286 - 26383331
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  26383286 gtgggcaaatatcataataataattatattagctatttatcaattg 26383331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 470
Target Start/End: Complemental strand, 5979719 - 5979675
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaatt 470  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||    
T  5979719 gtgggcaaatatcgtaataataattatattagttatttatcaatt 5979675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 468
Target Start/End: Complemental strand, 22742469 - 22742430
Alignment:
Q  429 ggcaaatatcgtaacaataattatattagctatttatcaa 468  Q
    |||||||| |||||||||||||||||||| ||||||||||    
T  22742469 ggcaaataccgtaacaataattatattagttatttatcaa 22742430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 429 - 471
Target Start/End: Original strand, 8824431 - 8824473
Alignment:
Q  429 ggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||||||||| | | ||||||||||||||||||||||||||||    
T  8824431 ggcaaatatctttataataattatattagctatttatcaattg 8824473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 471
Target Start/End: Original strand, 7608066 - 7608110
Alignment:
Q  427 tgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||||||||||| ||| ||||||||||| || |||||||||||||    
T  7608066 tgggcaaatatcataataataattatatcagttatttatcaattg 7608110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 10761193 - 10761148
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10761193 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 10761148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 10769512 - 10769467
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  10769512 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 10769467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 23138959 - 23138914
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  23138959 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 23138914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 30051643 - 30051598
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30051643 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 30051598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 38449606 - 38449561
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  38449606 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 38449561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 38456093 - 38456048
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  38456093 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 38456048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 8331404 - 8331449
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  8331404 gtggacaaatatcgtaacaataattatattagctatttatcaattg 8331449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 9586555 - 9586510
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  9586555 gtgggcaaatatcgtaataataattatattagctatttatcaattg 9586510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 10238755 - 10238710
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  10238755 gtgggcaaatatcgtaataataattatattagctatttatcaattg 10238710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 10244877 - 10244832
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  10244877 gtgggcaaatatcgtaataataattatattagctatttatcaattg 10244832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 11840268 - 11840223
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  11840268 gtgggcaaatatcgtaataataattatattagctatttatcaattg 11840223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 26429960 - 26429915
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  26429960 gtgggcaaatatcgtaataataattatattagctatttatcaattg 26429915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 28964497 - 28964542
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  28964497 gtgggcaaatatcgtaacaataattatattagctatttataaattg 28964542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 42191763 - 42191718
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  42191763 gtgggcaaatatcgtaataataattatattagctatttatcaattg 42191718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 42197705 - 42197660
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  42197705 gtgggcaaatatcgtaataataattatattagctatttatcaattg 42197660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 49151229 - 49151274
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  49151229 gtgggaaaatatcgtaacaataattatattagctatttatcaattg 49151274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 49157296 - 49157341
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  49157296 gtgggaaaatatcgtaacaataattatattagctatttatcaattg 49157341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 17056334 - 17056289
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||    
T  17056334 gtgggcaaatatcgtaataataattatattatctatttatcaattg 17056289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 470
Target Start/End: Complemental strand, 11846520 - 11846476
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaatt 470  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||    
T  11846520 gtgggcaaatatcgtaataataattatattagttatttatcaatt 11846476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 53071793 - 53071749
Alignment:
Q  427 tgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||||||||||| |||||||||||||||||| |||||||||||||    
T  53071793 tgggcaaatatcataacaataattatattagttatttatcaattg 53071749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 24644033 - 24643988
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||| |||||||||||| ||||| |||||||||||||    
T  24644033 gtgggcaaatatcctaacaataattacattagttatttatcaattg 24643988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 470
Target Start/End: Complemental strand, 55003944 - 55003900
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaatt 470  Q
    |||| |||||||||||| |||||||||||||| ||||||||||||    
T  55003944 gtggacaaatatcgtaataataattatattagttatttatcaatt 55003900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 34300055 - 34300100
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||| ||| ||| ||||||||||||| ||||||||||||||    
T  34300055 gtgggcaaacatcataataataattatattaactatttatcaattg 34300100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 13150232 - 13150187
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  13150232 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 13150187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 30964944 - 30964989
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30964944 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 30964989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 13455716 - 13455761
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  13455716 gtgggcaaatatcgtaataataattatattagctatttatcaattg 13455761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 13461657 - 13461702
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  13461657 gtgggcaaatatcgtaataataattatattagctatttatcaattg 13461702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 28683487 - 28683442
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  28683487 gtgggcaaatatcgtaacaataattatattagttatttatcaattg 28683442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 31001993 - 31002038
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  31001993 gtgggcaaatatcataacaataattatattagctatttatcaattg 31002038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 35085222 - 35085177
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  35085222 gtgggcaaatatcgtaataataattatattagctatttatcaattg 35085177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 36750031 - 36750076
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  36750031 gtgggcaaatatcgtaataataattatattagctatttatcaattg 36750076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 44717348 - 44717303
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  44717348 gtgggcacatatcgtaacaataattatattagctatttatcaattg 44717303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 433 - 471
Target Start/End: Complemental strand, 7771722 - 7771684
Alignment:
Q  433 aatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7771722 aatatcgtaacaataattatattagctatttatcaattg 7771684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 35091195 - 35091150
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  35091195 gtgggtaaatatcgtaataataattatattagctatttatcaattg 35091150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 35439913 - 35439868
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||||||||||||||||||||||||||||| | |||||||||||||    
T  35439913 gtgggcaaatatcgtaacaataattatattcgttatttatcaattg 35439868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 35442375 - 35442330
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||    
T  35442375 gtgggtaaatatcgtaacaataattatattcgctatttatcaattg 35442330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 470
Target Start/End: Original strand, 23283860 - 23283904
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaatt 470  Q
    |||| |||||||||||| |||||||||||||| ||||||||||||    
T  23283860 gtggacaaatatcgtaataataattatattagttatttatcaatt 23283904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 471
Target Start/End: Original strand, 31007985 - 31008016
Alignment:
Q  440 taacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||    
T  31007985 taacaataattatattagctatttatcaattg 31008016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 19879211 - 19879256
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||| ||||||||||| ||||| |||||||||||||||| |||||    
T  19879211 gtgggaaaatatcgtaataataactatattagctatttattaattg 19879256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 470
Target Start/End: Original strand, 23343180 - 23343224
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaatt 470  Q
    |||| |||||||| ||| ||||||||||||| |||||||||||||    
T  23343180 gtggacaaatatcataataataattatattaactatttatcaatt 23343224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 31051161 - 31051206
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31051161 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 31051206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 31057661 - 31057706
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31057661 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 31057706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 1077861 - 1077906
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  1077861 gtgggcaaatatcgtaataataattatattagctatttatcaattg 1077906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 25275589 - 25275544
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  25275589 gtgggcaaatatcgtaataataattatattagctatttatcaattg 25275544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 25382078 - 25382033
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  25382078 gtgggcaaatatcgtaataataattatattagctatttatcaattg 25382033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 44409617 - 44409662
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  44409617 gtgggcaaatatcgtaataataattatattagctatttatcaattg 44409662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 50305814 - 50305859
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  50305814 gtgggcaaatatcgtaataataattatattagctatttatcaattg 50305859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 34739603 - 34739648
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||    
T  34739603 gtgggaaaatatcgtaacaataattatattagctatttataaattg 34739648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 470
Target Start/End: Complemental strand, 12184139 - 12184095
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaatt 470  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||    
T  12184139 gtgggcaaatatcgtaataataattatattagttatttatcaatt 12184095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 25388045 - 25388000
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| |||||||||||||  |||||||||||||    
T  25388045 gtgggcaaatatcgtaataataattatattatttatttatcaattg 25388000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 471
Target Start/End: Complemental strand, 8093386 - 8093343
Alignment:
Q  428 gggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||  |||||||||||||||||||| |||||||||||||    
T  8093386 gggcaaatgccgtaacaataattatattagttatttatcaattg 8093343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 27954778 - 27954823
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||| ||||||| | |||||||||||| |||||||||||||    
T  27954778 gtgggcaaaaatcgtaatactaattatattagttatttatcaattg 27954823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 470
Target Start/End: Complemental strand, 24927311 - 24927267
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaatt 470  Q
    |||||||||||||   | |||||||||||||||||||||||||||    
T  24927311 gtgggcaaatatctctataataattatattagctatttatcaatt 24927267  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 471
Target Start/End: Complemental strand, 38152495 - 38152455
Alignment:
Q  431 caaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||| ||||||||||||||||||  |||||||||||||    
T  38152495 caaatattgtaacaataattatattaattatttatcaattg 38152455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 1730 - 1685
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  1730 gtgggtaaatatcgtaacaataattatattagctatttatcaattg 1685  T

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Target: scaffold0208 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 12012 - 12057
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  12012 gtgggcaaatatcgtaataataattatattagctatttatcaattg 12057  T

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Target: scaffold0208; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 470
Target Start/End: Original strand, 6139 - 6183
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaatt 470  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||    
T  6139 gtgggcaaatatcgtaataataattatattagttatttatcaatt 6183  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 12686721 - 12686676
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  12686721 gtgggcaaatatcgtaataataattatattagctatttatcaattg 12686676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 12692823 - 12692778
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  12692823 gtgggcaaatatcgtaataataattatattagctatttatcaattg 12692778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 28525928 - 28525883
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  28525928 gtgggaaaatatcgtaacaataattatattagctatttatcaattg 28525883  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 28532024 - 28531979
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  28532024 gtgggaaaatatcgtaacaataattatattagctatttatcaattg 28531979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 32097564 - 32097519
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  32097564 gtgggcaaatatcgtaataataattatattagctatttatcaattg 32097519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 41296896 - 41296941
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  41296896 gtgggcaaatatcgtaataataattatattagctatttatcaattg 41296941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 7390090 - 7390045
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||    
T  7390090 gtgggaaaatatcgtaacgataattatattagctatttatcaattg 7390045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 32094764 - 32094719
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||    
T  32094764 gtgggcaaatatcgtaataataattatattaactatttatcaattg 32094719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 431 - 471
Target Start/End: Original strand, 20499760 - 20499800
Alignment:
Q  431 caaatatcgtaacaataattatattagctatttatcaattg 471  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  20499760 caaatatcgtaataataattatattagctatttatcaattg 20499800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 471
Target Start/End: Original strand, 14609752 - 14609793
Alignment:
Q  430 gcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||| |||||||||||||| || ||||||||||    
T  14609752 gcaaatatcgtaataataattatattagttacttatcaattg 14609793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 467
Target Start/End: Complemental strand, 30384926 - 30384885
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatca 467  Q
    |||| ||||||| |||| ||||||||||||||||||||||||    
T  30384926 gtggacaaatattgtaataataattatattagctatttatca 30384885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 459
Target Start/End: Original strand, 30771900 - 30771933
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagct 459  Q
    ||||||||||||||||| ||||||||||||||||    
T  30771900 gtgggcaaatatcgtaataataattatattagct 30771933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 173432 - 173387
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||    
T  173432 gtgggcaaatatcgtaataataattatattagcgatttatcaattg 173387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 471
Target Start/End: Complemental strand, 1141 - 1096
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||| ||||||||||| |||||||||||||| |||||||||||||    
T  1141 gtgggaaaatatcgtaataataattatattagttatttatcaattg 1096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 466
Target Start/End: Complemental strand, 1316 - 1281
Alignment:
Q  431 caaatatcgtaacaataattatattagctatttatc 466  Q
    |||||||||||| |||||||||||||||||||||||    
T  1316 caaatatcgtaataataattatattagctatttatc 1281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 469
Target Start/End: Original strand, 13890 - 13933
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaat 469  Q
    ||||| |||||| |||| ||||||||||||||||||||||||||    
T  13890 gtgggaaaatatagtaataataattatattagctatttatcaat 13933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 471
Target Start/End: Original strand, 680 - 725
Alignment:
Q  426 gtgggcaaatatcgtaacaataattatattagctatttatcaattg 471  Q
    ||||| ||||||| ||| |||||||||||||| |||||||||||||    
T  680 gtgggaaaatatcataataataattatattagttatttatcaattg 725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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