View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9531H-LTR4-TNT-insertion-4 (Length: 292)
Name: F9531H-LTR4-TNT-insertion-4
Description: F9531H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9531H-LTR4-TNT-insertion-4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 3560264 - 3560539
Alignment:
| Q |
7 |
acatatagctactaaatcaagtataaatcttttaggagtgatggaaaaatactcatacgaagttnnnnnnntgtacaagaggaaagagtttgaaaaagaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3560264 |
acatatagctactaaatcaagtataaatcttttaggagtgatggaaaaatactcatacgaagttaaaaaaatgtacaagaggaaagagtttgaaaaagaa |
3560363 |
T |
|
| Q |
107 |
aagcatatagtattatattctaaacaataatgggaaatttcttgtaattttgttgttggagtatatagttgaaaaggttgaaaaagttaaaacaaagcac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3560364 |
aagcatatagtattatattctaaacaataatgggaaatttcttgtaattttgtttttggagtatatagttgaaaaggttgaaaaagttaaaacaaagcac |
3560463 |
T |
|
| Q |
207 |
aattatatctgtgttcagagactatagacttatatcttggctgcttttaagaagtcgataacaaattaaataatta |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3560464 |
aattatatctgtgttcagagactatagacttatatcttggctgcttttaagaagtcgataacaaattaaataatta |
3560539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 855 times since January 2019
Visitors: 1111