View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9531H-LTR4-TNT-insertion-5 (Length: 246)
Name: F9531H-LTR4-TNT-insertion-5
Description: F9531H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9531H-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 43533618 - 43533391
Alignment:
| Q |
9 |
aaacaacttagttaagcgcttacattaaaaacatttatcatataagtgcttactataagttatttctaaatcaaaaactaaaataaagttaaaatgtatc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43533618 |
aaacaacttagttaagcgcttacattaaaaacatttatcatataagtgcttactataagttatttctaaatcaaaaactaaaataaagttaaaatgtatc |
43533519 |
T |
|
| Q |
109 |
catatgagctataaataattttcataagatatactgaagagtttaacagcttatgaacatgtcaagctcaaataagttaatacgaactggccctaaccat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43533518 |
catatgagctataaataattttcataagatatactgaagagtttaacagcttatgaacatgtcaagctcaaataagttaatacgaactggccctaaccat |
43533419 |
T |
|
| Q |
209 |
gttcctttagttaattttaatctgaatt |
236 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
43533418 |
gttcctttagttaattttaatctgaatt |
43533391 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 49587057 - 49586984
Alignment:
| Q |
47 |
catataagtgcttactataagttatttctaaatcaaaaactaaaataaagttaaaatgtatccatatgagctat |
120 |
Q |
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| T |
49587057 |
catataagtgcttactataagctatttctataacaaaagataaaataaagtcaaactgttttcatataagctat |
49586984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 34563140 - 34563208
Alignment:
| Q |
9 |
aaacaacttagttaagcgcttacattaaaaacatttatcatataagtgctta-ctataagttatttcta |
76 |
Q |
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| T |
34563140 |
aaacaacttaattaaacgcttatagcataaacatttatcatataagtgcttatatataagttatttcta |
34563208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 12972744 - 12972797
Alignment:
| Q |
7 |
acaaacaacttagttaagcgcttacattaaaaacatttatcatataagtgctta |
60 |
Q |
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|||||||||||| ||||||||||| | | || ||||||||||||||||||||| |
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| T |
12972744 |
acaaacaacttaattaagcgcttatagcataagcatttatcatataagtgctta |
12972797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 29699144 - 29699241
Alignment:
| Q |
9 |
aaacaacttagttaagcgcttacattaaaaacatttatcatataagtgcttac-tataagttatttctaaatcaaaaactaaaataaagttaaaatgt |
105 |
Q |
| |
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|||| ||||||||||| ||||| | | ||| ||||||||||||| |||||| || |||||||||||| | ||||| ||||||||||| ||||||| |
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| T |
29699144 |
aaacgacttagttaagtgcttatagcataaatatttatcatataaatgcttatgtacaagttatttctataacaaaagataaaataaagtcaaaatgt |
29699241 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 991993 - 992093
Alignment:
| Q |
42 |
tttatcatataagtgcttac-tataagttatttctaaatcaaaaactaaaataaagttaaaatgtatccatatgagctataaataattttcataagatat |
140 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||| | |||||| |||||||||| ||||| | | ||||| || |||||| |||||||||| ||| |
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| T |
991993 |
tttatcatataagtgcttacgtataagttgtttctataacaaaaaataaaataaagacaaaatattttcatataaggtataaacttttttcataagctat |
992092 |
T |
|
| Q |
141 |
a |
141 |
Q |
| |
|
| |
|
|
| T |
992093 |
a |
992093 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 41981835 - 41981791
Alignment:
| Q |
61 |
ctataagttatttctaaatcaaaaactaaaataaagttaaaatgt |
105 |
Q |
| |
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|||||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
41981835 |
ctataagttatttctatatcaaaagataaaataaagttaatatgt |
41981791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 40943829 - 40943888
Alignment:
| Q |
37 |
aaacatttatcatataagtgcttactataagttatttctaaatcaaaaactaaaataaagt |
97 |
Q |
| |
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|||||||||||||| ||||||||| |||||| || ||||| | |||||| ||||||||||| |
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| T |
40943829 |
aaacatttatcata-aagtgcttattataagctacttctataacaaaaaataaaataaagt |
40943888 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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