View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9531H-LTR4-TNT-insertion-6 (Length: 388)
Name: F9531H-LTR4-TNT-insertion-6
Description: F9531H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9531H-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 10 - 380
Target Start/End: Original strand, 501207 - 501577
Alignment:
| Q |
10 |
cttagagcaactccagcgctggttattttaccactgtccaccagctgtaataacaaaacgaaataagagtatcataacattaccatttcatcaaatcaaa |
109 |
Q |
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| T |
501207 |
cttagagcaactccagcgctggttattttaccactgtccaccagctgtaataacaaaacgaaataagagtatcataacattaccatttcatcaaatcaaa |
501306 |
T |
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| Q |
110 |
catgttctcaagtttgtgcaaaatgtcacctttcattgtgaggaaagaaataaaggccaatgctctcactatttgttccacattttgcgaaactcaccag |
209 |
Q |
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| T |
501307 |
catgttctcaagtttgtgcaaaatgtcacctttcattgtgaggaaagaaataaaggccaatgctctcactatttgttccacattttgcgaaactcaccag |
501406 |
T |
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| Q |
210 |
ccacgcatctgatctttgaagcaattctgcatctggcacttcaggcagacgctttgtcacctcatgaactttagggcatgctaaattggacaaatggcca |
309 |
Q |
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| T |
501407 |
ccacgcatctgatctttgaagcaattctgcatctagcacttcaggcagacgctttgtcacctcatgaactttagggcatgctaaattggacaaatggcca |
501506 |
T |
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| Q |
310 |
attagtccagtgaatttatcatttctaaacttcagacaatgctttcgccgtagcagttaacaaatccatta |
380 |
Q |
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| T |
501507 |
attagtccagtgaatttatcatttctaaacttcagacaatgctttcgccgtagcagttaacaaatccatta |
501577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 99 - 329
Target Start/End: Original strand, 11788233 - 11788463
Alignment:
| Q |
99 |
atcaaatcaaacatgttctcaagtttgtgcaaaatgtcacctttcattgtgaggaaagaaataaaggccaatgctctcactatttgttccacattttgcg |
198 |
Q |
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| T |
11788233 |
atcaaatcaaacatgttctcaagtttgcgtaaaatgtcacctttcattctgaggaaagaaataaaggccgatgctcatattatttgttccaaatttcttg |
11788332 |
T |
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| Q |
199 |
aaactcaccagccacgcatctgatctttgaagcaattctgcatctggcacttcaggcagacgctttgtcacctcatgaactttagggcatgctaaattgg |
298 |
Q |
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| T |
11788333 |
aaactctctggccacacagctgatctttgaagcaattcaccatatagcacatcagggatatgtcttgcctcttcaagtactttagggcatgctaatgtgg |
11788432 |
T |
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| Q |
299 |
acaaatggccaattagtccagtgaatttatc |
329 |
Q |
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| T |
11788433 |
acaaatgtcccattagtcttgtgactttatc |
11788463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 99 - 192
Target Start/End: Original strand, 15281151 - 15281244
Alignment:
| Q |
99 |
atcaaatcaaacatgttctcaagtttgtgcaaaatgtcacctttcattgtgaggaaagaaataaaggccaatgctctcactatttgttccacat |
192 |
Q |
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| T |
15281151 |
atcaaatcaagcaagttcttaagtttgtgcaaaatatcacctttcatcttgaggaaagaaatagaggtcaatgctgtgattacttgttccacat |
15281244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 15441633 - 15441570
Alignment:
| Q |
110 |
catgttctcaagtttgtgcaaaatgtcacctttcattgtgaggaaagaaataaaggccaatgct |
173 |
Q |
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| T |
15441633 |
catgttgttaagtttgtgcaaaacgtcacctttcattctgagggaagaaataaaggccaatgct |
15441570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 11779136 - 11779172
Alignment:
| Q |
137 |
acctttcattgtgaggaaagaaataaaggccaatgct |
173 |
Q |
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| T |
11779136 |
acctttcattccgaggaaagaaataaaggccaatgct |
11779172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 18237963 - 18238007
Alignment:
| Q |
271 |
tcatgaactttagggcatgctaaattggacaaatggccaattagt |
315 |
Q |
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| T |
18237963 |
tcatgaactttagggcatgctaaagtagacaaatgtcccattagt |
18238007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 43721384 - 43721306
Alignment:
| Q |
114 |
ttctcaagtttgtgcaaaatgtcacctttcattgtgaggaaagaaataaaggccaatgctctcactatttgttccacat |
192 |
Q |
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| T |
43721384 |
ttctcaagtttgtgcaaaatatcacctttcatcttgaggaatgaaatagaggccaatgttgtgattatttgttccacat |
43721306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 28023705 - 28023627
Alignment:
| Q |
114 |
ttctcaagtttgtgcaaaatgtcacctttcattgtgaggaaagaaataaaggccaatgctctcactatttgttccacat |
192 |
Q |
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|||||||||||||||||||| |||||||| || |||| || |||||| ||||||||| | | | |||||||||||||| |
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| T |
28023705 |
ttctcaagtttgtgcaaaatatcacctttgatcttgagaaatgaaatagaggccaatgttgtgattatttgttccacat |
28023627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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