View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9531H-LTR4-TNT-insertion-7 (Length: 373)
Name: F9531H-LTR4-TNT-insertion-7
Description: F9531H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9531H-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 10 - 364
Target Start/End: Original strand, 36152154 - 36152508
Alignment:
| Q |
10 |
gacaagacaaacaagtggtaggattatacgagactctagctgacaatggtttctgtcaagctaactgtttttgttttcttgctttcacccaaagctctct |
109 |
Q |
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| T |
36152154 |
gacaagacaaacaagtggtaggattatacgagactctagctgacaatggtttctgtcaagctaactgtttttgttttcttgctttcacccaaagctctct |
36152253 |
T |
|
| Q |
110 |
agtacactccatgaagggaatttgactccatactcaaaatggttatgggagattactccctctctctttctctatcccagtaaatatgcttttctttttt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36152254 |
agtacactccatgaagggaatttgactccatactcaaaatggttatgggagattactccctctctctttctctatcccagtaaatatgcttttctttttt |
36152353 |
T |
|
| Q |
210 |
actattttggattgatttcttagtgttgggttcaaattttgttttgacatggaattatcattatcctttatataatcactctgtctcataaattaataat |
309 |
Q |
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| T |
36152354 |
actattttggattgatttcttagtgttgggttcaaattttgttttgacatggaattatcattatcctttatataatcactctgtctcataaattaataat |
36152453 |
T |
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| Q |
310 |
tgttacatttaagaaaaaatgtcacgaaacaagttagttttattttctccaattg |
364 |
Q |
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| T |
36152454 |
tgttacatttaagaaaaaatgtcacgaaacaagttagttttattttctccaattg |
36152508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 141 - 361
Target Start/End: Complemental strand, 26527100 - 26526883
Alignment:
| Q |
141 |
actcaaaatggttatgggaga---ttactccctctctctttctctatcccagtaaatatgcttttcttttttactattttggattgatttcttagtgttg |
237 |
Q |
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||||||||||||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26527100 |
actcaaaatggttatgggagaatattaatccctatctctttctctatgccagtaaatatgcttttcttttttactattttggattgattttttagtgttg |
26527001 |
T |
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| Q |
238 |
ggttcaaattttgttttgacatggaattatcattatcctttatataatcactctgtctcataaat---taataattgttacatttaagaaaaaa-tgtca |
333 |
Q |
| |
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| ||||||||| |||||||| ||||||||| ||| |||||||| |||||||||| ||||||||||||||||||| |||||| ||||| |
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| T |
26527000 |
gtttcaaatttagttttgac------------ttatcctttttatgatcactctatctcataaattaataataattgttacatttaaaaaaaaattgtca |
26526913 |
T |
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| Q |
334 |
cgaaacaa--gttagttttattttctccaa |
361 |
Q |
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| |||||| |||||||||||||||||||| |
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| T |
26526912 |
caaaacaagtgttagttttattttctccaa |
26526883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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