View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9531H-LTR4-TNT-insertion-8 (Length: 349)
Name: F9531H-LTR4-TNT-insertion-8
Description: F9531H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9531H-LTR4-TNT-insertion-8 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 10 - 334
Target Start/End: Original strand, 7767177 - 7767501
Alignment:
| Q |
10 |
gagtttatgcaatgtgtattggataaacttgattcatgttttttagatttgaagaagaatgatccaaaatttgagggcgataatatcgtaaagaaagttt |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7767177 |
gagtttatgcaatgtgtattggataaacttgattcatgttttttagatttgaagaagaatgatccaaaatttgagggcgataatatcgtaaagaaagttt |
7767276 |
T |
|
| Q |
110 |
ttggaggcagtttggttagcaggcttcggtgttgcaactgtggtcgctcttctgacactaatgaaccattgattgatttgagtctagaaatagaaaatgt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7767277 |
ttggaggcagtttggttagcaggcttcggtgttgcaactgtggtcgctcttctgacactaatgaaccattgattgatttgagtctagaaatagaaaatgt |
7767376 |
T |
|
| Q |
210 |
agaaactctttcaagtgctttagattctttcactacggtggaagatattgatgcgaagtttaaatgcgagggctgcaacgaagaagtttctatggagaaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7767377 |
agaaactctttcaagtgctttagattctttcactacggtggaagatattgatgcgaagtttaaatgcgagggctgcaacgaagaagtttctatggagaaa |
7767476 |
T |
|
| Q |
310 |
cagcttatgttggatcagacacctt |
334 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
7767477 |
cagcttatgttggatcagacacctt |
7767501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 334
Target Start/End: Original strand, 7778147 - 7778471
Alignment:
| Q |
10 |
gagtttatgcaatgtgtattggataaacttgattcatgttttttagatttgaagaagaatgatccaaaatttgagggcgataatatcgtaaagaaagttt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||| |
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| T |
7778147 |
gagtttatgcaatgtgtattggataaacttgattcatgttttttagaattgaagaaaaacgatccaaaatttgagggcgataatattgtaaagaaagttt |
7778246 |
T |
|
| Q |
110 |
ttggaggcagtttggttagcaggcttcggtgttgcaactgtggtcgctcttctgacactaatgaaccattgattgatttgagtctagaaatagaaaatgt |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
7778247 |
ttggaggcagtttggttagcaggcttcggtgttgtaactgtggtcgatcttccgacactaatgagccatcgattgatttgagtctagaaatagaaaatgc |
7778346 |
T |
|
| Q |
210 |
agaaactctttcaagtgctttagattctttcactacggtggaagatattgatgcgaagtttaaatgcgagggctgcaacgaagaagtttctatggagaaa |
309 |
Q |
| |
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||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
7778347 |
agatactctttcaagtgctttagattctttcacaacggtagaagatattgatgcaaagtttaaatgtgagggctgcaatgaagaagtttctatggagaaa |
7778446 |
T |
|
| Q |
310 |
cagcttatgttggatcagacacctt |
334 |
Q |
| |
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||||||||||| ||||||||||||| |
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| T |
7778447 |
cagcttatgttagatcagacacctt |
7778471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 334
Target Start/End: Original strand, 7773312 - 7773636
Alignment:
| Q |
10 |
gagtttatgcaatgtgtattggataaacttgattcatgttttttagatttgaagaagaatgatccaaaatttgagggcgataatatcgtaaagaaagttt |
109 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7773312 |
gagtttatgcaatgtgtatttgataaacttgatttatgttttttagatttgaagaataatgatccaaaatttgagggcgataatattgtaaagaaagttt |
7773411 |
T |
|
| Q |
110 |
ttggaggcagtttggttagcaggcttcggtgttgcaactgtggtcgctcttctgacactaatgaaccattgattgatttgagtctagaaatagaaaatgt |
209 |
Q |
| |
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||||||| ||||||||||||| |||||||||||| ||||||||| | |||||||||| |||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
7773412 |
ttggaggtagtttggttagcatgcttcggtgttgtaactgtggttgttcttctgacattaatgagccattgattgattttagtctagaaatagaaaatgt |
7773511 |
T |
|
| Q |
210 |
agaaactctttcaagtgctttagattctttcactacggtggaagatattgatgcgaagtttaaatgcgagggctgcaacgaagaagtttctatggagaaa |
309 |
Q |
| |
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||| |||||||||||||||||||| |||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7773512 |
agatactctttcaagtgctttagaatctttcactatggtggaacacattgacgcgaagtttaaatgcgagggctgcaacgaagaagtgtctatggagaaa |
7773611 |
T |
|
| Q |
310 |
cagcttatgttggatcagacacctt |
334 |
Q |
| |
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|| |||||||||||||||||||||| |
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| T |
7773612 |
caacttatgttggatcagacacctt |
7773636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 132 - 334
Target Start/End: Complemental strand, 12753863 - 12753661
Alignment:
| Q |
132 |
gcttcggtgttgcaactgtggtcgctcttctgacactaatgaaccattgattgatttgagtctagaaatagaaaatgtagaaactctttcaagtgcttta |
231 |
Q |
| |
|
|||||||||||| |||||| | |||||||| ||||||||| || |||||||| ||||||||||||||||||||||||| || |||||||||| || |
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| T |
12753863 |
gcttcggtgttgtaactgtagccgctcttccatcactaatgagccgttgattgacctgagtctagaaatagaaaatgtagattctatttcaagtgcattg |
12753764 |
T |
|
| Q |
232 |
gattctttcactacggtggaagatattgatgcgaagtttaaatgcgagggctgcaacgaagaagtttctatggagaaacagcttatgttggatcagacac |
331 |
Q |
| |
|
|| |||||||| | ||||||| | |||||||| ||| ||||||| ||||||||||| |||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
12753763 |
gagtctttcacaatggtggaaaacattgatgctaagcttaaatgtgagggctgcaatgaagaagtgtctgtggagaaacagcttatgttggatcagacac |
12753664 |
T |
|
| Q |
332 |
ctt |
334 |
Q |
| |
|
||| |
|
|
| T |
12753663 |
ctt |
12753661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 132 - 334
Target Start/End: Complemental strand, 12816823 - 12816621
Alignment:
| Q |
132 |
gcttcggtgttgcaactgtggtcgctcttctgacactaatgaaccattgattgatttgagtctagaaatagaaaatgtagaaactctttcaagtgcttta |
231 |
Q |
| |
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|||||||||||| |||||| | |||||||| ||||||||| | |||||||| ||||||||||||||||||||||||| || |||||||||| || |
|
|
| T |
12816823 |
gcttcggtgttgtaactgtagccgctcttccatcactaatgagcagttgattgacctgagtctagaaatagaaaatgtagattctatttcaagtgcattg |
12816724 |
T |
|
| Q |
232 |
gattctttcactacggtggaagatattgatgcgaagtttaaatgcgagggctgcaacgaagaagtttctatggagaaacagcttatgttggatcagacac |
331 |
Q |
| |
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|| |||||||| | ||||||| | |||||||| ||| ||||||| ||||||||||| |||||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
12816723 |
gagtctttcacaatggtggaaaacattgatgctaagcttaaatgtgagggctgcaatgaagaagtgtctgtggagaaacagcttatgttggatcagacac |
12816624 |
T |
|
| Q |
332 |
ctt |
334 |
Q |
| |
|
||| |
|
|
| T |
12816623 |
ctt |
12816621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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