View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9531H-LTR4-TNT-insertion-9 (Length: 466)
Name: F9531H-LTR4-TNT-insertion-9
Description: F9531H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9531H-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 9 - 456
Target Start/End: Complemental strand, 26450311 - 26449864
Alignment:
| Q |
9 |
gttcaatgaacagaatttgaatttgtaacttcaaataatatatttcagatcttcactagttgtaaaatggctaccacaattattaataataatttctctt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26450311 |
gttcaatgaacagaatttgaatttgtaacttcaaataatatatttcagatcttcactagttgtaaaatggctaccacaattattaataataatttctctt |
26450212 |
T |
|
| Q |
109 |
ttatcaaatgatagcaaatttgcataagagatataactctgctattgacaggtgagtaacataagagatgtatgggttctctttgcaactttcaaggcac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26450211 |
ttatcaaatgatagcaaatttgcataagagatataactctgctattgacaggtgagtaacataagagatgtatgggttctctttgcaactttcaaggcac |
26450112 |
T |
|
| Q |
209 |
cctcaaacgttcctatttctcctcattataaaaacaactccattctcttctatacttgcatttggtgttgttatggcctttgcatgtgtccttgcaaaag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26450111 |
cctcaaacgttcctatttctcctcattataaaaacaactccattctcttctatacttgcatttggtgttgttatggcctttgcatgtgtccttgcaaaag |
26450012 |
T |
|
| Q |
309 |
ataatttattgttcactgagatggccagattgctggctaaccattttatcaaattaccctaaaactgatctctcccttgataccaaaatgatgcaagttt |
408 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26450011 |
ataatttattgttcactgagattgccagattgctggctaaccatttcatcaaattaccctaaaactgatctctcccttgataccaaaatgatgcaagttt |
26449912 |
T |
|
| Q |
409 |
ctttcaacccgctgttagatcttcccaaggattggcacatatcgaatt |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26449911 |
ctttcaacccgctgttagatcttcccaaggattggcacatatcgaatt |
26449864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 26436948 - 26436840
Alignment:
| Q |
9 |
gttcaatgaacagaatttgaatttgtaacttcaaataatatatttcagatcttcactagttgtaaaatggctaccacaattattaataataatttctctt |
108 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26436948 |
gttcaatgaaaataatttgaatttgtaacttcatataaaatagttcaaatcttcactagttgtaaaatggctaccacaattattaataataatttctctt |
26436849 |
T |
|
| Q |
109 |
ttatcaaat |
117 |
Q |
| |
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||||||||| |
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|
| T |
26436848 |
ttatcaaat |
26436840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 306
Target Start/End: Complemental strand, 42114928 - 42114861
Alignment:
| Q |
239 |
aaaacaactccattctcttctatacttgcatttggtgttgttatggcctttgcatgtgtccttgcaaa |
306 |
Q |
| |
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|||||||||||||||||||||||| |||| |||||| ||||||||| ||||||| || |||||||| |
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| T |
42114928 |
aaaacaactccattctcttctatatttgctcttggtgctgttatggcttttgcatctggtcttgcaaa |
42114861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 449
Target Start/End: Complemental strand, 26436386 - 26436315
Alignment:
| Q |
378 |
ctctcccttgataccaaaatgatgcaagtttctttcaacccgctgttagatc-ttcccaaggattggcacata |
449 |
Q |
| |
|
|||||||||||| ||||||| |||||||| ||||||||| ||| || |||| || ||||||||||||||||| |
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| T |
26436386 |
ctctcccttgatcccaaaatcatgcaagtcgctttcaaccggct-tttgatctttaccaaggattggcacata |
26436315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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