View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9542H-LTR4-TNT-insertion-11 (Length: 481)
Name: F9542H-LTR4-TNT-insertion-11
Description: F9542H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9542H-LTR4-TNT-insertion-11 |
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Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 8 - 471
Target Start/End: Original strand, 16742081 - 16742544
Alignment:
| Q |
8 |
tgtatagcatacctgcaaatagagtgtatccattagaatcgacaatgctaaacaacaagagatgttgcggctcaagtcatggctggctcgcaacgttaga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16742081 |
tgtatagcatacctgcaaatagagtgtatccattagaatcgacaatgctaaacaacaagagatgttgcggctcaagtcatggctggctcgcaacgttaga |
16742180 |
T |
|
| Q |
108 |
cgaagaagatgtcatcacttgggtgaatccttttaaggatgttgctcctattagtttgccacccatcgataattatatggtatgtaaggattacgacttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16742181 |
cgaagaagatgtcatcacttgggtgaatccttttaaggatgttgctcctattagtttgccacccatcgataattatatggtatgtaaggattacgacttc |
16742280 |
T |
|
| Q |
208 |
aatgtgcataaggttacattgtcggttgatcctataacaagtccaaatgattatgtggttgcagcaatttacactacccgtagttgtcttgcttttataa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16742281 |
aatgtgcataaggttacattgtcggttgatcctataacaagtccaaatgattatgtggttgcagcaatttacactacccgtagttgtcttgcttttataa |
16742380 |
T |
|
| Q |
308 |
aagcaggacaagagttttggacatacatacaagacactggccattttggtttcatcgatattacattctacaaaggtttggtgtatgctgtaactcgttg |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16742381 |
aagcaggacaagagttttggacatacatacaagacactgaccattttggtttcatcgatattacattctacaaaggtttggtgtatgctgtaactcgttg |
16742480 |
T |
|
| Q |
408 |
gnnnnnnnttgtgtgcttcgatctttgttattcggatgacccttgggatgtggaacaaagaatt |
471 |
Q |
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| T |
16742481 |
gaaaaaaattgtgtgcttcgatctttgttattcggatgacccttgggatgtggaacaaagaatt |
16742544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 8 - 471
Target Start/End: Original strand, 16723692 - 16724147
Alignment:
| Q |
8 |
tgtatagcatacctgcaaatagagtgtatccattagaatcgacaatgctaaacaacaagagatgttgcggctcaagtcatggctggctcgcaacgttaga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16723692 |
tgtatagcatacctgcaaatagagtgtatccattagaatcgacaatgctaaacaacaagagatgttgcggctcaagtcatggctggctcgcaacgttaga |
16723791 |
T |
|
| Q |
108 |
cgaagaagatgtcatcacttgggtgaatccttttaaggatgttgctcctattagtttgccacccatcgataattatatggtatgtaaggattacgacttc |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16723792 |
cgaagaagatgtcatcacttgggtgaatccttttaaggatgttgctcctattagtttgccacccattgataattatatggtatgtaaggattacgacttc |
16723891 |
T |
|
| Q |
208 |
aatgtgcataaggttacattgtcggttgatcctataacaagtccaaatgattatgtggttgcagcaatttacactacccgtagttgtcttgcttttataa |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
16723892 |
aatgtgcataaggttacattgtcggttgatcctataacaagtccaaatgattatgtggttgcaggaatttacactacccgtagtagtcttgcttttataa |
16723991 |
T |
|
| Q |
308 |
aagcaggacaagagttttggacatacatacaagacactggccattttggtttcatcgatattacattctacaaaggtttggtgtatgctgtaactcgttg |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16723992 |
aagcaggacaagagttttggacatacatacaagacactgaccattttggtttcatcgatattacattctacaaaggtttggtgtatgctg--------tg |
16724083 |
T |
|
| Q |
408 |
gnnnnnnnttgtgtgcttcgatctttgttattcggatgacccttgggatgtggaacaaagaatt |
471 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
16724084 |
gaaaaaaattgtgtgcttcgatctttgttattcggatgacccttggggtgtggaacaaagaatt |
16724147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 35629270 - 35629225
Alignment:
| Q |
238 |
cctataacaagtccaaatgattatgtggttgcagcaatttacacta |
283 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| |||||| |||||| |
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| T |
35629270 |
cctataacaagaccaaatgattatatggttgcggcaattcacacta |
35629225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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