View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9542H-LTR4-TNT-insertion-12 (Length: 552)
Name: F9542H-LTR4-TNT-insertion-12
Description: F9542H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9542H-LTR4-TNT-insertion-12 |
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| [»] scaffold0034 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 7 - 542
Target Start/End: Complemental strand, 31283373 - 31282838
Alignment:
| Q |
7 |
agctaccaccaacaactgaaagcaaatcaccatcaaagatctcttcttcatctaaatacaaatcatcaatactccgaaacgccgcatgcaaaacaaccac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31283373 |
agctaccaccaacaactgaaagcaaatcaccatcaaagatctcttcttcatctaaatacaaatcatcaatactccgaaacgccgcatgcaaaacaaccac |
31283274 |
T |
|
| Q |
107 |
cgcagaaccgacgagcactgacacaaggacgttaagccaaacgccggtgaagacaagagcgacgatggtgagggtggagagtaggacgaggaggaagcgg |
206 |
Q |
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| T |
31283273 |
cgcagaaccgacgagcactgacacaaggacgttaagccaaacgccggtgaagacaagagcgacgatggtgagggtggagagtaggacgaggaggaagcgg |
31283174 |
T |
|
| Q |
207 |
tcatcaatggtgaaacggaagaggacgacggggcggtcgcggaagaagaaaagcaagaaccaaacggcgaagacgacgaggaagacgatgagggagaggg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31283173 |
tcatcaatggtgaaacggaagaggacgacggggcggtcacggaagaagaaaagcaagaaccaaacggcgaagacgacgaggaagacgatgagggagagag |
31283074 |
T |
|
| Q |
307 |
ggtggtagaggaggctgaggaagaggatgaagaggatgatgatggcgtagttgatgcggaagtggttgaggttacgttttatacggagagtggtttcgaa |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31283073 |
ggtggtagaggaggctgaggaagaggatgaagaggatgatgatggcgtagttgatgcggaagtggttgaggttgcgttttatacggagagtggtttcgaa |
31282974 |
T |
|
| Q |
407 |
gagggagtgggggagagtgaaggattggggagagaagaagttttgccatgggcggcgcgtggggtagttggaaggtgtggtggcgcgtggagaagttgag |
506 |
Q |
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| T |
31282973 |
gagggagtgggggagagtgaaggattggggagagaagaagttttgccatgggcggcgcgtggggtagttggaaggtgtggtggcgcgtggagaagttgag |
31282874 |
T |
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| Q |
507 |
gttgaagggagagagttgtaagttggagtaggatta |
542 |
Q |
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| T |
31282873 |
gttgaagggagagagttgtaagttggagtaggatta |
31282838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 7 - 266
Target Start/End: Original strand, 3209141 - 3209397
Alignment:
| Q |
7 |
agctaccaccaacaactgaaagcaaatcaccatcaaagatctcttcttcatctaaatacaaatcatcaatactccgaaacgccgcatgcaaaacaaccac |
106 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| |
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| T |
3209141 |
agctaccaccaacaactgaaagcaaatcaccatcaaagatctcttcttcatctaaatacaaatcatcaatactctgaaacgcctcattcaaaacaaccac |
3209240 |
T |
|
| Q |
107 |
cgcagaaccgacgagcactgacacaaggacgttaagccaaacgccggtgaagacaagagcgacgatggtgagggtggagagtaggacgaggaggaagcgg |
206 |
Q |
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||||| ||| || | ||| ||| ||||||||||||||||||||||||||||||||||| |||| |||||| |||| |||||||| |||||| |||||| |
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| T |
3209241 |
cgcagcaccaac-acgact--cacgaggacgttaagccaaacgccggtgaagacaagagctacgacggtgagagtggtgagtaggaggaggagtaagcgg |
3209337 |
T |
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| Q |
207 |
tcatcaatggtgaaacggaagaggacgacggggcggtcgcggaagaagaaaagcaagaac |
266 |
Q |
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|| || |||||||||||||||||||||| ||||||||| |||||||||| ||||||||| |
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| T |
3209338 |
tcgtcgatggtgaaacggaagaggacgagggggcggtcatggaagaagaagagcaagaac |
3209397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 532
Target Start/End: Original strand, 3209418 - 3209452
Alignment:
| Q |
498 |
gaagttgaggttgaagggagagagttgtaagttgg |
532 |
Q |
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| T |
3209418 |
gaagttgaggttgaagggagagagttgtaagttgg |
3209452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 145; Significance: 5e-76; HSPs: 2)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 7 - 266
Target Start/End: Original strand, 108968 - 109232
Alignment:
| Q |
7 |
agctaccaccaacaactgaaagcaaatcaccatcaaagatctcttcttcatctaaatacaaatcatcaatactccgaaacgccgcatgcaaaacaaccac |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| |
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| T |
108968 |
agctaccaccaacaactgaaagcaaatcaccatcaaagatctcttcttcatctaaatacaaatcatcaatactctgaaacgcctcattcaaaacaaccac |
109067 |
T |
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| Q |
107 |
cgcagaaccgacgagcactga-------cacaaggacgttaagccaaacgccggtgaagacaagagcgacgatggtgagggtggagagtaggacgaggag |
199 |
Q |
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|||| |||||||||||| || ||| ||||||||||||| ||||||||||||||||||||| |||| |||||| | || |||||||| |||||| |
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| T |
109068 |
cgcaacaccgacgagcaccgacacgactcacgaggacgttaagcc-aacgccggtgaagacaagagctacgacggtgagagcggtgagtaggaggaggag |
109166 |
T |
|
| Q |
200 |
gaagcggtcatcaatggtgaaacggaagaggacgacggggcggtcgcggaagaagaaaagcaagaac |
266 |
Q |
| |
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|||| |||| || |||||||||||||||||||||| |||||||| |||||||||| ||||||||| |
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| T |
109167 |
gaagaggtcgtcgatggtgaaacggaagaggacga-agggcggtcatggaagaagaagagcaagaac |
109232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 532
Target Start/End: Original strand, 109253 - 109287
Alignment:
| Q |
498 |
gaagttgaggttgaagggagagagttgtaagttgg |
532 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
109253 |
gaagttgaggttgaagggagagagttgtaagttgg |
109287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 358
Target Start/End: Complemental strand, 43061912 - 43061836
Alignment:
| Q |
282 |
acgaggaagacgatgagggagagggggtggtagaggaggctgaggaagaggatgaagaggatgatgatggcgtagtt |
358 |
Q |
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|||| |||||||||||| |||| || || |||| || |||||||||||||||| ||| | ||||||||||||||| |
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| T |
43061912 |
acgacgaagacgatgagtgagattggatgccagagaagactgaggaagaggatgatgagaaggatgatggcgtagtt |
43061836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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