View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9542H-LTR4-TNT-insertion-13 (Length: 203)
Name: F9542H-LTR4-TNT-insertion-13
Description: F9542H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9542H-LTR4-TNT-insertion-13 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 33028973 - 33028788
Alignment:
| Q |
8 |
caaaactctttcaaaatttatttcctttacttatgcccgaaagtgttataggaaattggagtcaagaaataactgagaattattttctttccggttaatt |
107 |
Q |
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| T |
33028973 |
caaaactctttcaaaatttatttcctttacttatgcccgaaagtgttataggaaattggagtcaagaaataactgagaattattttctttccggttaatt |
33028874 |
T |
|
| Q |
108 |
tgaagaggtgttgaacaaaatacttggtgcagagaaattaaatagaaaatttaacggggccatttatactgattgtatggaaatta |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33028873 |
tgaagaggtgttgaacaaaatacttggtgcagagaaattaaatagaaaatttaacggggccatttatactgattgtatggaaatta |
33028788 |
T |
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