View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9542H-LTR4-TNT-insertion-14 (Length: 754)
Name: F9542H-LTR4-TNT-insertion-14
Description: F9542H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9542H-LTR4-TNT-insertion-14 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 743; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 743; E-Value: 0
Query Start/End: Original strand, 8 - 754
Target Start/End: Complemental strand, 38523176 - 38522430
Alignment:
| Q |
8 |
ataaaggcggttctagagttggtaaatgtgtactgtcagatgcatggtgcttgttgtcatgtatgtaagaattaattcaccttgttacaaatctaaagtt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38523176 |
ataaaggcggttctagagttggtaaatgtgtactgtcagatgcatggtgcttgttgtcatgtatgtaagaattaattcaccttgttacaaatctaaagtt |
38523077 |
T |
|
| Q |
108 |
gacaaaaacagccaacttatgtaatttcaatgttggtgagataatcagcggttgacggttactacacacataataaatcattgatatatggaaatatttt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38523076 |
gacaaaaacagccaacttatgtaatttcaatgttggtgagataatcagcggttgacggttactacacacataataaatcattgatatatggaaatatttt |
38522977 |
T |
|
| Q |
208 |
tctttaaatttctcattaattgttgacattgcttactttaccatgtaaattgaactgccaattcactttagaggagccatatctttaatcattagtatta |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38522976 |
tctttaaatttctcattaattgttgacattgcttactttaccatgtaaattgaactgccaattcactttagaggagctatatctttaatcattagtatta |
38522877 |
T |
|
| Q |
308 |
ttctcaaatgcatgttttctttgttagacaatggacacatgcatgcatcactattttttataggcaaattattagtggttaatttgttagaaggatttgg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38522876 |
ttctcaaatgcatgttttctttgttagacaatggacacatgcatgcatcactattttttataggcaaattattagtggttaatttgttagaaggatttgg |
38522777 |
T |
|
| Q |
408 |
atttgttagtagcagggatcgagccctcaacctattttatgatccttcgttagagcctggatcgagccctgtaacatatgttagctttgttctagttctt |
507 |
Q |
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| T |
38522776 |
atttgttagtagcagggatcgagccctcaacctattttatgatccttcgttagagcctggatcgagccctgtaacatatgttagctttgttctagttctt |
38522677 |
T |
|
| Q |
508 |
actatactgttttattaggatgccatcaacaatatttggcctgatattttacttttactctgtgcagtatgtgcattttctgcagaagaagtattcactt |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38522676 |
actatactgttttattaggatgccatcaacaatatttggcctgatattttacttttactctgtgcagtatgtgcattttctgcagaagaagtattcactt |
38522577 |
T |
|
| Q |
608 |
ggatctttcaacttgttgggccatatagcaccaattcaggcaacaagtttactggttgttggcccctttcttgactattggttaacaagaaaacgagttg |
707 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38522576 |
ggatctttcaacttgttgggccatatagcaccaattcaggcaacaagtttactggttgttggcccctttcttgactattggttaacaagaaaacgagttg |
38522477 |
T |
|
| Q |
708 |
atgcctacaactatggtttaacatccactgtatgtttcactctctct |
754 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38522476 |
atgcctacaactatggtttaacatccactgtatgtttcactctctct |
38522430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 566 - 745
Target Start/End: Complemental strand, 43458293 - 43458114
Alignment:
| Q |
566 |
tctgtgcagtatgtgcattttctgcagaagaagtattcacttggatctttcaacttgttgggccatatagcaccaattcaggcaacaagtttactggttg |
665 |
Q |
| |
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||||||||||||||||||||||| |||| ||| ||||| ||||||| || |||||||||||||| | |||||| |||||| ||||||||||| | | |
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| T |
43458293 |
tctgtgcagtatgtgcattttcttcagaggaaatattctattggatcatttaacttgttgggccacactgcaccagcacaggcagcaagtttactgctag |
43458194 |
T |
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| Q |
666 |
ttggcccctttcttgactattggttaacaagaaaacgagttgatgcctacaactatggtttaacatccactgtatgtttc |
745 |
Q |
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| ||||||||| | ||||||||| | |||| |||||||||||||| || ||||||| || |||||||||||| ||||| |
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| T |
43458193 |
taggcccctttatggactattggctgacaaacaaacgagttgatgcatatgactatggcttgacatccactgtaagtttc |
43458114 |
T |
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