View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9542H-LTR4-TNT-insertion-16 (Length: 345)
Name: F9542H-LTR4-TNT-insertion-16
Description: F9542H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9542H-LTR4-TNT-insertion-16 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 7 - 337
Target Start/End: Original strand, 15519743 - 15520074
Alignment:
| Q |
7 |
aattaggagcaaatgcgaatgatgattttctcaaacatttgtttactttaaactttcttctgatttgttcacttcaatattttgttcttgttattcatta |
106 |
Q |
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| T |
15519743 |
aattaggagcaaatgcgaatgatgattttctcaaacatttgtttactttaaactttcttctgatttgttcacttcaatattttgttcttgttattcatta |
15519842 |
T |
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| Q |
107 |
ttatattatgtacagctcatttatgtatactaatagttgatgttagagcccacatattttggcccctttattttgtgtatgcaagtaaatatgaaagggt |
206 |
Q |
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| T |
15519843 |
ttatattatgtacagctcatttatgtatactaatagttgatgttagagcccacatattttggctcctttattttgtgtatgcaagtaaatatgaaagggt |
15519942 |
T |
|
| Q |
207 |
actccgatccatgcaaactactatcccatataatcattattagttctcttttgtttg-nnnnnnnnnccataagaaagaatcaagttatcaactggccga |
305 |
Q |
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| T |
15519943 |
actccgatccatgcaaactactatcccatataatcattattagttctcttttgtttgttttttttttccataagaaagaatcaagttatcaactggccga |
15520042 |
T |
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| Q |
306 |
acttgtataatcctttttcactaactatatta |
337 |
Q |
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| T |
15520043 |
acttgtataatcctttttcactaactatatta |
15520074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 15529482 - 15529689
Alignment:
| Q |
7 |
aattaggagcaaatgcgaatgatgattttctcaaacatttgtttactttaaactttcttctgatttgttcacttcaatattttgttcttgttattcatta |
106 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||| |
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| T |
15529482 |
aattaggagcaaatgggaatgatgattttctcaaacatttgtttactttaaactttcttctgaattgtgtacttcattattttgttcttgttattcatta |
15529581 |
T |
|
| Q |
107 |
ttatattatgtacagctcatttatgtatacta---atagttgatgttagagcccacatattttggcccctttattttgtgtatgcaagtaaatatgaaag |
203 |
Q |
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| ||| | || || || |||| |||||||||||||||||| ||| |||||||| |||||||||||||||||||| ||||||| |||| |
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| T |
15529582 |
ctcatctatat-------atgtagctacactacacatagttgatgttagagccgacacattttggctcctttattttgtgtatgcaaataaatataaaag |
15529674 |
T |
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| Q |
204 |
ggtactccgatccat |
218 |
Q |
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| T |
15529675 |
ggtacaccgatccat |
15529689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 15523458 - 15523548
Alignment:
| Q |
90 |
gttcttgttattcattattatattatgtacagctcatttatgta--tactaatagttgatgttagagcccacatattttggcccctttatttt |
180 |
Q |
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|||||||||||||||||||||| |||||||| || ||||||||| ||| |||| |||||||||||| || ||||||||||||||||||| |
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| T |
15523458 |
gttcttgttattcattattatactatgtacaacttatttatgtagctacacatag--gatgttagagccggcacattttggcccctttatttt |
15523548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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