View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9542H-LTR4-TNT-insertion-2 (Length: 522)
Name: F9542H-LTR4-TNT-insertion-2
Description: F9542H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9542H-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 506; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 8 - 513
Target Start/End: Original strand, 7821110 - 7821615
Alignment:
| Q |
8 |
cgggggttgttatttccaagaaggtaaggaagttaagttggaaatgaaggtagaagatgcatataagaggtctattcacacaacattgaattggatacaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7821110 |
cgggggttgttatttccaagaaggtaaggaagttaagttggaaatgaaggtagaagatgcatataagaggtctattcacacaacattgaattggatacaa |
7821209 |
T |
|
| Q |
108 |
gatacgataaatcctagcaagactcaagttttcttttgtacttatcccctatgcatttcaggtttgtaatttgtttgacaatgccatgaacactctctta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7821210 |
gatacgataaatcctagcaagactcaagttttcttttgtacttatcccctatgcatttcaggtttgtaatttgtttgacaatgccatgaacactctctta |
7821309 |
T |
|
| Q |
208 |
ctttcgttcattcactttcttcatttagtgttcatttatgagagagatagacacatatgataactttgtgagatccacttaattactaatctacatgtgt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7821310 |
ctttcgttcattcactttcttcatttagtgttcatttatgagagagatagacacatatgataactttgtgagatccacttaattactaatctacatgtgt |
7821409 |
T |
|
| Q |
308 |
ctatctctcttattttgtccatcaaagatgctctaaaaagaccatactactaagttataaatataatgtccgatttacacctatctccaagtagaatgaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7821410 |
ctatctctcttattttgtccatcaaagatgctctaaaaagaccatactactaagttataaatataatgtccgatttacacctatctccaagtagaatgaa |
7821509 |
T |
|
| Q |
408 |
actccatctcacaaggttacaaaatcaaagtattaccactaaacagtctaaactgacacatgaaaaattgttcaagaacaaactttagaataaatgtgta |
507 |
Q |
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| T |
7821510 |
actccatctcacaaggttacaaaatcaaagtattaccactaaacagtctaaactgacacatgaaaaattgttcaagaacaaactttagaataaatgtgta |
7821609 |
T |
|
| Q |
508 |
caattg |
513 |
Q |
| |
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|||||| |
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| T |
7821610 |
caattg |
7821615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 7811144 - 7811346
Alignment:
| Q |
10 |
ggggttgttatttccaagaaggtaaggaagttaagttggaaatgaaggtagaagatgcatataagaggtctattcacacaacattgaattggatacaaga |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7811144 |
ggggttgttatttccaagaaggtaaggaagttaagttggaaatgaaggtagaagatgcatataagaggtctattcacacaacattgaattggatacaaga |
7811243 |
T |
|
| Q |
110 |
tacgataaatcctagcaagactcaagttttcttttgtacttatcccctatgcatttcaggtttgtaatttgtttgacaatgccatgaacactctcttact |
209 |
Q |
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| T |
7811244 |
tacgataaatcctagcaagactcaagttttcttttgtacttatcccctatgcatttcaggtttgtaatttgtttgacaatgccatgaacactctcttact |
7811343 |
T |
|
| Q |
210 |
ttc |
212 |
Q |
| |
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||| |
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|
| T |
7811344 |
ttc |
7811346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 7811348 - 7811517
Alignment:
| Q |
18 |
tatttccaagaaggtaaggaagttaagttggaaatgaaggtagaagatgcatataagaggtctattcacacaacattgaattggatacaagatacgataa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7811348 |
tatttccaagaaggtaaggaagttaagttggaaatgaaggtagaagatgcatataagaggtctattcacacaacattgaattggatacaagatacaataa |
7811447 |
T |
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| Q |
118 |
atcctagcaagactcaagttttcttttgtacttat-cccctatgcatttcaggtttgtaatttgtttgac |
186 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||| | ||| |||||||||||||||||||||||||||| |
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| T |
7811448 |
atcctaacaagactcaagttttctttcgtacttatgctcctgtgcatttcaggtttgtaatttgtttgac |
7811517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 4623542 - 4623593
Alignment:
| Q |
227 |
ttcatttagtgttcatttatgagagagatagacacatatgataactttgtga |
278 |
Q |
| |
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||||||||||||| |||||||||||||||| ||| |||||||| |||||||| |
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| T |
4623542 |
ttcatttagtgtttatttatgagagagatatacatatatgatagctttgtga |
4623593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 273
Target Start/End: Complemental strand, 13503515 - 13503468
Alignment:
| Q |
226 |
cttcatttagtgttcatttatgagagagatagacacatatgataactt |
273 |
Q |
| |
|
||||||||||||||||||||||||||| || || |||| ||||||||| |
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| T |
13503515 |
cttcatttagtgttcatttatgagagacatggatacatgtgataactt |
13503468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 16875136 - 16875078
Alignment:
| Q |
229 |
catttagtgttcatttatgagagagatagacacatatgataactttgtgagatccactt |
287 |
Q |
| |
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|||||| ||| ||||||||||||||||||||||| ||||| ||| ||||||| ||||| |
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| T |
16875136 |
catttattgtccatttatgagagagatagacacaagtgatagcttagtgagattcactt |
16875078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 2749639 - 2749688
Alignment:
| Q |
241 |
atttatgagagagatagacacatatgataactttgtgagatccacttaat |
290 |
Q |
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|||||| |||||||||||||||| ||||| ||||||| |||| ||||||| |
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| T |
2749639 |
atttataagagagatagacacatgtgatagctttgtgggatctacttaat |
2749688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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