View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9542H-LTR4-TNT-insertion-3 (Length: 404)
Name: F9542H-LTR4-TNT-insertion-3
Description: F9542H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9542H-LTR4-TNT-insertion-3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 394
Target Start/End: Complemental strand, 5694020 - 5693634
Alignment:
| Q |
8 |
acaaccacgttaagaagagccgtaaatcacatatcagcacttcaggctagtgatggtcattggccttctctaaatgctggccctctcttttattttcctc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5694020 |
acaaccacgttaagaagagccgtaaatcacatatcagcacttcaggctagtgatggtcattggccttctctaaatgctggccctctcttttattttcctc |
5693921 |
T |
|
| Q |
108 |
ccttggtgagtattcatatattcagccatcaataatagaaatgaacatagaaattcaaagtttgaaaatttaatgttattgtttatgaaattgaaaaaca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5693920 |
ccttggtgagtattcatatattcagccatcaataatagaaatgaacatagaaattcaaagtttgaaaattttatgttattgtttatgaaattgaaaaaca |
5693821 |
T |
|
| Q |
208 |
agactactaagtaattgaaaattatttttagaagaaattctcaaatgtttttgatacgcatgaaattaagatcacataagatgtattgctattaaacact |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5693820 |
agactactaagtaattgaaaattatttttagaagaaattctcaaatgtttttgatacgcatgaaattaagatcacataagatgtattgctattaaacact |
5693721 |
T |
|
| Q |
308 |
aaaacaatgcatcctctgccnnnnnnngaaatgcataccgcctgctttatatattcaatttctatgataatgcactaatcaagatta |
394 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5693720 |
aaaacaatgcatcctctgccaaaaaaagaaatgcataccgcctgctttatatattcaatttctatgataatgcactaatcaagatta |
5693634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 11 - 162
Target Start/End: Complemental strand, 5724424 - 5724273
Alignment:
| Q |
11 |
accacgttaagaagagccgtaaatcacatatcagcacttcaggctagtgatggtcattggccttctctaaatgctggccctctcttttattttcctccct |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5724424 |
accacgttaagaagagccgtacatcacatatcagcacttcaggctagtgatggtcattggccttctctaaatgctggccctctcttttattttcctccct |
5724325 |
T |
|
| Q |
111 |
tggtgagtattcatatattcagccatcaataatagaaatgaacatagaaatt |
162 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
5724324 |
tggtgagtattcatatattcagtcattaataatagaaatgaacacagaaatt |
5724273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 127 - 319
Target Start/End: Complemental strand, 5672127 - 5671933
Alignment:
| Q |
127 |
attcagccatcaataatagaaatgaacatagaaattcaaagtttgaaaatttaatgttattgtttatgaaattgaaaaacaagactactaagtaattgaa |
226 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
5672127 |
attcagccatcaatgatagaaatgaacaaagaaattcaaagtttgaaaattttatgttattgtttatgaaattgaaaaacaagactaccaagtaattcaa |
5672028 |
T |
|
| Q |
227 |
aattatttttagaagaaattctcaaatgtttttgatacgcatgaaattaagatcacataagatg--tattgctattaaacactaaaacaatgcat |
319 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| ||||| ||||||||| ||||||||||||| |||| |||||| |||||||||| ||||| |
|
|
| T |
5672027 |
aattattttcagaagaaattctcaattgtttttaatacgtgtgaaattaaaatcacataagatgtatattcttattaagcactaaaacattgcat |
5671933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 5672559 - 5672448
Alignment:
| Q |
8 |
acaaccacgttaagaagagccgtaaatcacatatcagcacttcaggctagtgatggtcattggccttctctaaatgctggccctctcttttattttcctc |
107 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
5672559 |
acaactacgttaagaagagcagtaaatcacatatcagcacttcaggctagtgatggtcattggccttctctaaatgccggccctctcttctattttcctc |
5672460 |
T |
|
| Q |
108 |
ccttggtgagta |
119 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
5672459 |
ccttagtgagta |
5672448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 158 - 290
Target Start/End: Complemental strand, 5724088 - 5723959
Alignment:
| Q |
158 |
aaattcaaagtttgaaaatttaatgttattgtttatgaaattgaaaaacaagactactaagtaattgaaaattatttttagaagaaattctcaaatgttt |
257 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||| || ||||||||||| | || | ||||||| ||| |
|
|
| T |
5724088 |
aaattcaaagtttgagaactttatgttattgtttatgaaattgaaaaacaggactactaagtagttcaaaattattttcaaaaatacttctcaa---ttt |
5723992 |
T |
|
| Q |
258 |
ttgatacgcatgaaattaagatcacataagatg |
290 |
Q |
| |
|
|| || ||||||||||||||||||||||||| |
|
|
| T |
5723991 |
ttttaacacatgaaattaagatcacataagatg |
5723959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 394
Target Start/End: Complemental strand, 5723938 - 5723881
Alignment:
| Q |
337 |
aatgcataccgcctgctttatatattcaatttctatgataatgcactaatcaagatta |
394 |
Q |
| |
|
|||| ||||| | ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5723938 |
aatgtataccacttgctttatatattcaatttctttgataatgcactaatcaagatta |
5723881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 393
Target Start/End: Complemental strand, 5671895 - 5671839
Alignment:
| Q |
335 |
gaaatgcataccgcctgctttatatattcaatttctatgataatgcactaatcaagatt |
393 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| || ||||||||||||||||||| |
|
|
| T |
5671895 |
gaaatgcataccgcctgctttatata--caaattctttgctaatgcactaatcaagatt |
5671839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 951 times since January 2019
Visitors: 1117