View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9542H-LTR4-TNT-insertion-4 (Length: 400)
Name: F9542H-LTR4-TNT-insertion-4
Description: F9542H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9542H-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 8 - 390
Target Start/End: Complemental strand, 41791870 - 41791488
Alignment:
| Q |
8 |
ctaactatcaaagtcattcttataggtggcgggactgaaaataaggtgtgatattcttcaattgctgccatcgtgatacttctaaaattaagagagaaga |
107 |
Q |
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| T |
41791870 |
ctaactatcaaagtcattcttataggtggcgggactgaaaataaggtgtgatattcttcaattgctgccatcgtgatacttctaaaattaagagagaaga |
41791771 |
T |
|
| Q |
108 |
aggaaatataaataatacactttgttgtctttatcatcactttaaattacataatcataaatgaaaggttcctgaactttggaaaagaannnnnnnnnng |
207 |
Q |
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| T |
41791770 |
aggaaatataaataatacactttgttgtctttatcatcactttaaattacataatcataaatgaaaggttcctgaactttggaaaagaattttttttttg |
41791671 |
T |
|
| Q |
208 |
ggttcaaatacaatatttaaatgacatcttttggaatatctcctatcataaggtatattttcacatttatttattttagcttcttggacaataactcatt |
307 |
Q |
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| T |
41791670 |
ggttcaaatacaatatttaaatgacatcttttggaatatctcctatcataaggtatattttcacatttatttattttagcttcttggacaataactcatt |
41791571 |
T |
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| Q |
308 |
ctcctttgtagggcattttcgtactctttgggatctgggatgcaaaatcagggagattaccaacatactgacatacatgatta |
390 |
Q |
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| T |
41791570 |
ctcctttgtagggcattttcgtactctttgggatctgggatgcaaaatcagggagattaccaacatactgacatacatgatta |
41791488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 8 - 382
Target Start/End: Complemental strand, 41780459 - 41780078
Alignment:
| Q |
8 |
ctaactatcaaagtcattcttataggtggcgggactgaaaataaggtgtgatattcttcaattgc-tgccatcgtgata--cttc-----taaaattaag |
99 |
Q |
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| T |
41780459 |
ctaactatcaaagtcattcttatacgttgttggactgaaaataaggtgtgatattcctcaattggatgccatcgtgataatcttaaaagttaaaattaag |
41780360 |
T |
|
| Q |
100 |
agagaagaaggaaatataaataatacactttgttgtctttatcatcactttaaattacataatcataaatgaaaggttcctgaactttggaaaagaannn |
199 |
Q |
| |
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| T |
41780359 |
agagaagaaggaaatataa-taatactctttgg---ctgtcacatcactttaaaatacataatcataaatgaaaggttcctcaagttaggaaaagaaaaa |
41780264 |
T |
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| Q |
200 |
nnnnnnng-------ggttcaaatacaatatttaaatgacatcttttggaatatctcctatcataaggtatattttcacatttatttattttagcttctt |
292 |
Q |
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||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
41780263 |
ataataaccttttttggtacccatacaatatttaaatgacatcttttggaatatt--ctatcataaggtatatttt-acatttatt-attttagcttctt |
41780168 |
T |
|
| Q |
293 |
ggacaataactcattctcctttgtagggcattttcgtactctttgggatctgggatgcaaaatcagggagattaccaacatactgacata |
382 |
Q |
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| T |
41780167 |
ggacaataaatcattctcctttgcagggcatttttgtactctctgagatctcagacgcaaaatcagggagattacgagcatactgacata |
41780078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 41787023 - 41786828
Alignment:
| Q |
8 |
ctaactatcaaagtcattcttataggtggcgggactgaaaataaggtgtgatattcttcaatt-gctgccatcgtgatacttctaaaatta--agagaga |
104 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| | ||||||||||||||| |||||||| ||||||| |
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| T |
41787023 |
ctaactatcaaagtcattcttataggttgttggactgaaaataaggtgtgatattcctcaattggatgccatcgtgatactcttaaaattaagagagaga |
41786924 |
T |
|
| Q |
105 |
agaaggaaatataaataatacactt-tgttgtctttatcatcactttaaattac----ataatcataaatgaaaggttcctgaactttggaaaagaa |
196 |
Q |
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| T |
41786923 |
agaaggaaatataaataatactcttcggttgtc-ttatcatcactttaaagtacatatataatcataaatgaaaggttcctgaagttaggaaaagaa |
41786828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 285 - 360
Target Start/End: Complemental strand, 41785739 - 41785664
Alignment:
| Q |
285 |
agcttcttggacaataactcattctcctttgtagggcattttcgtactctttgggatctgggatgcaaaatcaggg |
360 |
Q |
| |
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| T |
41785739 |
agcttcttggataataactcattctcttttacggggcatttttgtactctctggaatctgggatgcaaaatcaggg |
41785664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 41786802 - 41786741
Alignment:
| Q |
215 |
atacaatatttaaatgacatcttttggaatatctcctatcataaggtatattttcacatttattt |
279 |
Q |
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| T |
41786802 |
atacaatatttagatgacatcttttgaaata--ttctatcataaggtata-tttcacatttattt |
41786741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 1681103 - 1681145
Alignment:
| Q |
154 |
ttacataatcataaatgaaaggttcctgaactttggaaaagaa |
196 |
Q |
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|||||||||||||||||||||||||| ||| || ||||||||| |
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| T |
1681103 |
ttacataatcataaatgaaaggttccggaaattaggaaaagaa |
1681145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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