View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9542H-LTR4-TNT-insertion-5 (Length: 362)
Name: F9542H-LTR4-TNT-insertion-5
Description: F9542H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9542H-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 354
Target Start/End: Complemental strand, 23205843 - 23205499
Alignment:
| Q |
10 |
ccaatttcccatttccttccaacaacacttccaacactaacaccttccctctctccaaacgatctatcttactaatcacaccacccaatcaaaccctaca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23205843 |
ccaatttcccatttccttccaacaacacttccaacactaacaccttccctctctccaaacgatctatcttactaatcacaccacccaatcaaaccctaca |
23205744 |
T |
|
| Q |
110 |
ccccccttggttaatcaaaatcggaccagactcacgtgataaaactcgtctctggtaccctctctcacttgactaccaactctatcttcaactccctcaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23205743 |
ccccccttggttaatcaaaatcggaccagactcacgtgataaaactcgtctctggtaccctctctcacttgactaccaactctatcttcaactccctcaa |
23205644 |
T |
|
| Q |
210 |
ctcatcgatttcaaagaatatcacatcattcatctcggcgatgagttcgtcattggtaacttcccttccgactacttttctgtcgacttcatgaagaagg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23205643 |
ctcatcgatttcaaagaatatcacatcattcatctcggcgatgagttcgtcattggtaacttcccttccgactacttttctgtcgacttcatgaagaagg |
23205544 |
T |
|
| Q |
310 |
ttcttgtttaccgcactttacatagttatgctcttctcactatta |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23205543 |
ttcttgtttaccgcactttacatagttatgctcttctcactatta |
23205499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 9485319 - 9485388
Alignment:
| Q |
113 |
cccttggttaatcaaaatcggaccagactcacgtgataaaactcgtctctggtaccctctctcacttgac |
182 |
Q |
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||||||||||||||||||||| || ||||||||||| ||||||||||||| | |||||||||| |||| |
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| T |
9485319 |
cccttggttaatcaaaatcggtcctgactcacgtgaccgaactcgtctctggaatcctctctcacgtgac |
9485388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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