View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: F9542H-LTR4-TNT-insertion-6 (Length: 791)
Name: F9542H-LTR4-TNT-insertion-6
Description: F9542H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9542H-LTR4-TNT-insertion-6 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 752; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 752; E-Value: 0
Query Start/End: Original strand, 13 - 785
Target Start/End: Complemental strand, 35110589 - 35109817
Alignment:
| Q |
13 |
aggtaattgatttttatcgaaacaaaagtatttaaannnnnnnctgtgaaataatggcaaaattatgaatatattgatgcagccttgaccgcaaccacat |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35110589 |
aggtaattgatttttatcgaaacaaaagtatttaaatttttttctgtgaaataatggcaaaattatgaatatattgatgcagccttgaccgcaaccacat |
35110490 |
T |
|
| Q |
113 |
tatggttgtagagacatcagaaaccttaatattgcggtcacacactaattttaaaacacatatgaacaaaagctaaacattacctttagagctgtaatag |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35110489 |
tatggttgtagagacatcagaaaccttaatattgcggtcacacactaattttaaaacacatatgaacaaaagctaaacattacctttagagctgtaatag |
35110390 |
T |
|
| Q |
213 |
catactcaagggttgcaccaactccactgtatcttaactgtggaatagaaatttaattattaaaaactcttcaataatgtgtatatcatatagaaattca |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35110389 |
catactcaagggttgcaccaactccactgtatcttaactgtggaatagaaatttaattattaaaaactcttcaataatgtgtatatcatatagaaattca |
35110290 |
T |
|
| Q |
313 |
tttctttagaaaaatagtgaagtagacctgattaaatggagggaccatgttagcaatgtttcggaccatgaaagcttctccaggttgaaagttcaggata |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35110289 |
tttctttagaaaaatagtgaagtagacctgattaaatggagggaccatgttagcaatgtttcggaccatgaaagcttctccaggttgaaagttcaggata |
35110190 |
T |
|
| Q |
413 |
atagagggactcactctagagtcagaacaagcaaataccataaactacaacatgtaaatgaaattgaaaattagattaatattaaaggacagaaaaaata |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35110189 |
atagagggactcactctagagtcagaacaagcaaataccataaactacaacatgtaaatgaaattgaaaattagattaatattaaaggacagaaaaaata |
35110090 |
T |
|
| Q |
513 |
gaaacatatacttttgtataaatcaagctcgaaataattaatcaccttgggggattgtcctttagcaagtcgatcatacaatttccggtccttgctgtca |
612 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35110089 |
gaaacatatacttttgtataaatcaagctcgaaataattaatcaccttgggggattgtcctttagcaagtcgatcatacaatttccggtccttgctgtca |
35109990 |
T |
|
| Q |
613 |
tatataaaaggaagcatgaatgaatccaaaaaatttaagtacttgataattgaatttgaactttctataggcatgatatgaattttatatttaatttgta |
712 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35109989 |
tatataaaaggaagcatgaatgaatccaaaaaatttaagtacttgataattgaatttgaactttctataggcatgatatgaattttatatttaatttgta |
35109890 |
T |
|
| Q |
713 |
agtttactcgaaattgttgagcttgaagtaagtaaaaccatcaatgattctctgctcagcaggatcaattggt |
785 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35109889 |
agtttactcgaaattgttgagcttgaagtaagtaaaaccatcaatgattctctgctcagcaggatcaattggt |
35109817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 150 - 637
Target Start/End: Complemental strand, 35097213 - 35096739
Alignment:
| Q |
150 |
tcacacactaattttaaaacacatatgaacaaaagctaaaca-ttacctttagagctgtaatagcatactcaagggttgcaccaactccactgtatctta |
248 |
Q |
| |
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||||| || ||||||||||||| | |||| | ||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35097213 |
tcacaaacaaattttaaaacacttttgaatagaagctgatcacttacctttagagctgtaatagcatactcaagggttgcaccaactccactgtatctta |
35097114 |
T |
|
| Q |
249 |
actgtggaatagaaatttaattattaaaaactcttcaataatgtgtatatcatatagaaattcatttctttagaaaaatagtgaagtagacctgattaaa |
348 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35097113 |
actgtggaatagaaatttaattattaaaaactcttcaataatgtgtatatcatatagaaattcatttctttagaaaaatagtgaagtagacctgattaaa |
35097014 |
T |
|
| Q |
349 |
tggagggaccatgttagcaatgtttcggaccatgaaagcttctccaggttgaaagttcaggataatagagggactcactctagagtcagaacaagcaaat |
448 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| |
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|
| T |
35097013 |
tggagggaccatgttagcaatgtttcgaaccatgaaagcttcaccaggttgaaagttcaggataacagagggactcactcgagagtcggaacaagcaaat |
35096914 |
T |
|
| Q |
449 |
accataaactacaacatgtaaatgaaattgaaaattagattaatattaaaggacagaaaaaatagaaacatatacttttgtataaatcaagctcgaaata |
548 |
Q |
| |
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|||||||||||||||| |||| ||| |||||| ||||||||||||||| || | ||||| | | |||||||||||| ||| || |||| |
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| T |
35096913 |
accataaactacaaca--caaat-aaaatgaaaaatagattaatattaaatgaaacaaaaa----------agatttttgtataaataaagatc-taata |
35096828 |
T |
|
| Q |
549 |
attaatcaccttgggggattgtcctttagcaagtcgatcatacaatttccggtccttgctgtcatatataaaaggaagcatgaatgaat |
637 |
Q |
| |
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||||||||||||||| || || |||||||||||||||||||||| || | ||| ||||||| |||||||||||||||||||| |||||| |
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| T |
35096827 |
attaatcaccttgggagactggcctttagcaagtcgatcatacagttccgggttcttgctgccatatataaaaggaagcatgcatgaat |
35096739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 159 - 485
Target Start/End: Complemental strand, 35103098 - 35102768
Alignment:
| Q |
159 |
aattttaaaacacatatgaacaaaagctaaacattacctttagagctgtaatagcatactcaagggttgcaccaactcc-actgtatcttaactgtggaa |
257 |
Q |
| |
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||||||||||||| |||||| | |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
35103098 |
aattttaaaacacttatgaatagaagcgaaacattacctttagagctgtaattgcatactcaagggttgcaccaactcccactatatcttaactgtggaa |
35102999 |
T |
|
| Q |
258 |
tagaaatttaattattaaaaactcttcaataatg---tgtatatcatatagaaattcatttctttagaaaaatagtgaagtagacctgattaaatggagg |
354 |
Q |
| |
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||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| ||| |
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| T |
35102998 |
tagaaatttaattattaaaaactcttcaataataatttatatatcatatatcaattcatttgtttagaaaaacagtgaagtagacctgattaaatgtagg |
35102899 |
T |
|
| Q |
355 |
gaccatgttagcaatgtttcggaccatgaaagcttctccaggttgaaagttcaggataatagagggactcactctagagtcagaacaagcaaataccata |
454 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35102898 |
gaccatgttagcaatgtttcggaccatgaaagcttctccatgttgaaagttcaggataatagagggactcactctagagtcagagcaagcaaataccata |
35102799 |
T |
|
| Q |
455 |
aactacaacatgtaaatgaaattgaaaatta |
485 |
Q |
| |
|
||||| |||| ||| ||||||||||||||| |
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|
| T |
35102798 |
aactaaaacacataagtgaaattgaaaatta |
35102768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 677 - 784
Target Start/End: Complemental strand, 35096548 - 35096441
Alignment:
| Q |
677 |
ctataggcatgatatgaattttatatttaatttgtaagtttactcgaaattgttgagcttgaagtaagtaaaaccatcaatgattctctgctcagcagga |
776 |
Q |
| |
|
|||||||||| |||| || || ||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
35096548 |
ctataggcatcatattaaaattttatttaatttgcaagtttacttgaaattgttgagcttgaagtacgtaaaaccatcaatgattctctgatcagcaggt |
35096449 |
T |
|
| Q |
777 |
tcaattgg |
784 |
Q |
| |
|
|||||||| |
|
|
| T |
35096448 |
tcaattgg |
35096441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 661 - 780
Target Start/End: Complemental strand, 35102637 - 35102524
Alignment:
| Q |
661 |
attgaatttgaactttctataggcatgatatgaattttatatttaatttgtaagtttactcgaaattgttgagcttgaagtaagtaaaaccatcaatgat |
760 |
Q |
| |
|
||||||| |||||| |||||||||| |||| || || |||||||||| ||||||||||||||||||||||||||||||| |||| | || || |
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|
| T |
35102637 |
attgaatatgaactaactataggcatcatattaaaattttatttaattttcaagtttactcgaaattgttgagcttgaagtaggtaa------ctattat |
35102544 |
T |
|
| Q |
761 |
tctctgctcagcaggatcaa |
780 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
35102543 |
tctctgctcagcaggatcaa |
35102524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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