View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9542H-LTR4-TNT-insertion-8 (Length: 560)

Name: F9542H-LTR4-TNT-insertion-8
Description: F9542H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9542H-LTR4-TNT-insertion-8
F9542H-LTR4-TNT-insertion-8
[»] chr5 (13 HSPs)
chr5 (200-475)||(29568210-29568485)
chr5 (200-474)||(29168239-29168513)
chr5 (201-475)||(1758133-1758407)
chr5 (201-475)||(29425281-29425555)
chr5 (200-475)||(27918634-27918909)
chr5 (300-475)||(38157354-38157527)
chr5 (201-308)||(29569708-29569815)
chr5 (56-126)||(29568559-29568629)
chr5 (58-126)||(1757999-1758067)
chr5 (56-126)||(29569867-29569937)
chr5 (56-102)||(29166883-29166929)
chr5 (58-99)||(29425195-29425236)
chr5 (56-88)||(27918541-27918573)
[»] chr4 (9 HSPs)
chr4 (201-475)||(18986085-18986359)
chr4 (206-475)||(27461990-27462259)
chr4 (201-475)||(27521176-27521450)
chr4 (206-475)||(27482129-27482398)
chr4 (58-126)||(27461851-27461919)
chr4 (58-126)||(27481990-27482058)
chr4 (58-126)||(27521516-27521584)
chr4 (58-126)||(18985951-18986019)
chr4 (470-551)||(9234010-9234091)
[»] chr3 (2 HSPs)
chr3 (200-475)||(25518468-25518743)
chr3 (69-126)||(25518343-25518400)
[»] chr8 (2 HSPs)
chr8 (467-551)||(19966509-19966593)
chr8 (467-551)||(21026403-21026487)
[»] chr1 (2 HSPs)
chr1 (467-551)||(20785222-20785306)
chr1 (467-551)||(29470752-29470836)
[»] chr7 (1 HSPs)
chr7 (467-542)||(29869012-29869087)
[»] scaffold0135 (1 HSPs)
scaffold0135 (470-551)||(39875-39956)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 200 - 475
Target Start/End: Complemental strand, 29568485 - 29568210
Alignment:
Q  200 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29568485 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 29568386  T
Q  300 aatgctcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatca 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29568385 aatgctcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatca 29568286  T
Q  400 gtagatgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaa 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29568285 gtagatgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaa 29568210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 200 - 474
Target Start/End: Original strand, 29168239 - 29168513
Alignment:
Q  200 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 299  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29168239 ttctgctcaccaactatcatccaataagcattctttcaacgcaagcaatctcacccgtaatggcttctccaccattacacttcctttcagtctccgtggg 29168338  T
Q  300 aatgctcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatca 399  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29168339 aatgctcttagctgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatca 29168438  T
Q  400 gtagatgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaa 474  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||    
T  29168439 gtagatgtatatctgaagttattgatccttctaaggttaaagaagcagttgctctttatttgaactcttctgaaa 29168513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 201 - 475
Target Start/End: Original strand, 1758133 - 1758407
Alignment:
Q  201 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 300  Q
    ||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1758133 tctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgcggga 1758232  T
Q  301 atgctcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatcag 400  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||    
T  1758233 atgctcttagccgctgtgtctctgatccatgcacctcgccagatcaatccattccggtaaaagggctatcaactgctttgcagcctctgcctccaatcag 1758332  T
Q  401 tagatgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaa 475  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1758333 gagatgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaa 1758407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 201 - 475
Target Start/End: Original strand, 29425281 - 29425555
Alignment:
Q  201 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 300  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||    
T  29425281 tctgctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcatgcgtaatggcttctctgccattacacttcctttcagtctccgtggga 29425380  T
Q  301 atgctcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatcag 400  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  29425381 atgctcttagccgctgtgtctctgatccatgcaccttgccgaatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccgatcag 29425480  T
Q  401 tagatgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaa 475  Q
    ||||||||||| ||||||||||||||||| | ||||||||||||||||| || ||||||||||||||||||||||    
T  29425481 tagatgtatatatgaagttattgatccttataaggttaaagaagcagtttcttgttatttgaactctgctgaaaa 29425555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 200 - 475
Target Start/End: Original strand, 27918634 - 27918909
Alignment:
Q  200 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 299  Q
    |||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27918634 ttctgctcaccaactatcatccaagaagcattcttctggcgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggc 27918733  T
Q  300 aatgctcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatca 399  Q
    || ||||||  | ||||||| || ||||||||||| ||||| ||||||||||| ||||| ||||||  ||| |||||||||| |||||| ||||||||||    
T  27918734 aacgctcttcactgctgtgtatccgatccatgcactttgccagatcaatccattccggttaaagggtcgtcgactgctttgccgcctctccctccgatca 27918833  T
Q  400 gtagatgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaa 475  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  27918834 ggagatgtatatctgaagttattgatccttctgaggttaaagaagcagtttcttgttatttgaactctgctgaaaa 27918909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 300 - 475
Target Start/End: Original strand, 38157354 - 38157527
Alignment:
Q  300 aatgctcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatca 399  Q
    ||||||||| |||||||||||  ||| ||||||  || ||||||||||||||||||||| ||||||  |||||||| ||||| |||||||||||  ||||    
T  38157354 aatgctcttcgccgctgtgtcaatgacccatgc--ctggccggatcaatccatgccggttaaagggtcgtcaactggtttgccgcctctgcctctaatca 38157451  T
Q  400 gtagatgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaa 475  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||    
T  38157452 ggagatgtatatctgaagttattgatccttctgaggttaaagaaacagtttcttgttatttgaactctgctgaaaa 38157527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 201 - 308
Target Start/End: Complemental strand, 29569815 - 29569708
Alignment:
Q  201 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 300  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29569815 tctgctcaccaactatcatccaagaagcattcttccgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggca 29569716  T
Q  301 atgctctt 308  Q
    ||||||||    
T  29569715 atgctctt 29569708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 29568629 - 29568559
Alignment:
Q  56 gagtgatctacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29568629 gagtgatctacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 29568559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 1757999 - 1758067
Alignment:
Q  58 gtgatctacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 126  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1757999 gtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 1758067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 29569937 - 29569867
Alignment:
Q  56 gagtgatctacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 126  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  29569937 gagtggtctacagattcaacaagaatccattttgatccctcacaaacacaaacaatccatgattattccaa 29569867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 102
Target Start/End: Original strand, 29166883 - 29166929
Alignment:
Q  56 gagtgatctacagattcaacaagaatccatgttgatccctcacaaac 102  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  29166883 gagtgatctacagattcaacaagaatccatgatgatccctcacaaac 29166929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 29425195 - 29425236
Alignment:
Q  58 gtgatctacagattcaacaagaatccatgttgatccctcaca 99  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  29425195 gtgatttacagattcaacaagaatccatgttgatccctcaca 29425236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 27918541 - 27918573
Alignment:
Q  56 gagtgatctacagattcaacaagaatccatgtt 88  Q
    |||||||||||||||||||||||||||||||||    
T  27918541 gagtgatctacagattcaacaagaatccatgtt 27918573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 201 - 475
Target Start/End: Original strand, 18986085 - 18986359
Alignment:
Q  201 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 300  Q
    |||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18986085 tctgctcaccaaccgtcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctccgccattacactttctttcagtctccgtggga 18986184  T
Q  301 atgctcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatcag 400  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  18986185 atactcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccaatcag 18986284  T
Q  401 tagatgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaa 475  Q
     |||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  18986285 gagatgtatatctgaagttattgatccgtctgatgttaaagaagcagttgatcgttatttgaactctgctgaaaa 18986359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 206 - 475
Target Start/End: Original strand, 27461990 - 27462259
Alignment:
Q  206 tcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgct 305  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  27461990 tcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgtggaaatgct 27462089  T
Q  306 cttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatcagtagat 405  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  27462090 cttagccgctgtgtctctgatccatgcacctttccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctctgcctccgatcagcagat 27462189  T
Q  406 gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaa 475  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||    
T  27462190 gtatatctgaagttattgatcctactgaggttaaagaagcagtagctcgttatttgaactgtgctgaaaa 27462259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 201 - 475
Target Start/End: Complemental strand, 27521450 - 27521176
Alignment:
Q  201 tctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggga 300  Q
    ||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  27521450 tctgcccaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcggga 27521351  T
Q  301 atgctcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatcag 400  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  27521350 atgctcttagccgctgtgtctctgatccttgcaccttgccggatcaatccatgccggtaaaagggccgtcaactgctttgcagcctcagcctccgatcag 27521251  T
Q  401 tagatgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaa 475  Q
     |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||    
T  27521250 cagatgtatatctgaagttattgatccttttgaggttaaagaagcagtagctcgttatttgaactctgctaaaaa 27521176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 206 - 475
Target Start/End: Original strand, 27482129 - 27482398
Alignment:
Q  206 tcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgct 305  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||    
T  27482129 tcaccaaccatcatccaagaagcattcttttgacgcaagcaatctcacccgtaatggcttctctgccattacaattcctttcagtctccgcgggaatgct 27482228  T
Q  306 cttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatcagtagat 405  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  27482229 cttagccgctgtgtctctgatccatgcacctttccggatcaatccatgccagtaaaagggccgtcaactgctttgcagcctctgcctccgatcagcagat 27482328  T
Q  406 gtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaa 475  Q
    |||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |||||||||    
T  27482329 gtatatctgaagttatcgatcctactgaggttaaagaagcagtagctcgttatttgaactgtgctgaaaa 27482398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 27461851 - 27461919
Alignment:
Q  58 gtgatctacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 126  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27461851 gtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 27461919  T

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Target: chr4; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 27481990 - 27482058
Alignment:
Q  58 gtgatctacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 126  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27481990 gtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 27482058  T

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Target: chr4; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 27521584 - 27521516
Alignment:
Q  58 gtgatctacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 126  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27521584 gtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 27521516  T

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Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 18985951 - 18986019
Alignment:
Q  58 gtgatctacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 126  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18985951 gtgatttacaaattcaacaagaatccatggtgatccctcacaaacagaaacaatccatgattattccaa 18986019  T

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Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 470 - 551
Target Start/End: Original strand, 9234010 - 9234091
Alignment:
Q  470 tgaaaattaccttatcattggcatctttgatcaaacattgcttattttcaaagatgactttaaatcctttatcaagtaattg 551  Q
    ||||||||||||||||||||||||||| ||||| ||  || |||||||||||||||||| |||||||||| ||| |||||||    
T  9234010 tgaaaattaccttatcattggcatcttcgatcatactatgattattttcaaagatgactataaatcctttctcatgtaattg 9234091  T

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Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 200 - 475
Target Start/End: Original strand, 25518468 - 25518743
Alignment:
Q  200 ttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggg 299  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  25518468 ttctcctcaccaaccatcatccaagaagcattctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtcttcgtggt 25518567  T
Q  300 aatgctcttagccgctgtgtctctgatccatgcaccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgcagcctctgcctccgatca 399  Q
    ||||||||| || |||||||| |||||||||||||||||||||||||| | |||||||| ||||||  ||| |||||||||| |||||||||||||||||    
T  25518568 aatgctcttcgctgctgtgtcgctgatccatgcaccttgccggatcaagctatgccggttaaagggtcgtcgactgctttgccgcctctgcctccgatca 25518667  T
Q  400 gtagatgtatatctgaagttattgatccttctgaggttaaagaagcagttgctcgttatttgaactctgctgaaaa 475  Q
    | ||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||    
T  25518668 ggagatgtatatctgaagttattgatcctttggaggttaaagaagcagttgcttgttatttgaactctgctgaaaa 25518743  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 25518343 - 25518400
Alignment:
Q  69 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25518343 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaa 25518400  T

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Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 467 - 551
Target Start/End: Complemental strand, 19966593 - 19966509
Alignment:
Q  467 tgctgaaaattaccttatcattggcatctttgatcaaacattgcttattttcaaagatgactttaaatcctttatcaagtaattg 551  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19966593 tgctgaaaattaccttatcattggcatctttgatcaaacattgcttattttcaaagatgactttaaatcctttatcaagtaattg 19966509  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 467 - 551
Target Start/End: Original strand, 21026403 - 21026487
Alignment:
Q  467 tgctgaaaattaccttatcattggcatctttgatcaaacattgcttattttcaaagatgactttaaatcctttatcaagtaattg 551  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21026403 tgctgaaaattaccttatcattggcatctttgatcaaacattgcttattttcaaagatgactttaaatcctttatcaagtaattg 21026487  T

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Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 467 - 551
Target Start/End: Original strand, 20785222 - 20785306
Alignment:
Q  467 tgctgaaaattaccttatcattggcatctttgatcaaacattgcttattttcaaagatgactttaaatcctttatcaagtaattg 551  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20785222 tgctgaaaattaccttatcattggcatctttgatcaaacattgcttattttcaaagatgactttaaatcctttatcaagtaattg 20785306  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 467 - 551
Target Start/End: Complemental strand, 29470836 - 29470752
Alignment:
Q  467 tgctgaaaattaccttatcattggcatctttgatcaaacattgcttattttcaaagatgactttaaatcctttatcaagtaattg 551  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29470836 tgctgaaaattaccttatcattggcatctttgatcaaacattgcttattttcaaagatgactttaaatcctttatcaagtaattg 29470752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 467 - 542
Target Start/End: Complemental strand, 29869087 - 29869012
Alignment:
Q  467 tgctgaaaattaccttatcattggcatctttgatcaaacattgcttattttcaaagatgactttaaatcctttatc 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29869087 tgctgaaaattaccttatcattggcatctttgatcaaacattgcttattttcaaagatgactttaaatcctttatc 29869012  T

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Target: scaffold0135 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 470 - 551
Target Start/End: Original strand, 39875 - 39956
Alignment:
Q  470 tgaaaattaccttatcattggcatctttgatcaaacattgcttattttcaaagatgactttaaatcctttatcaagtaattg 551  Q
    ||||||||||||||||||||||||||| ||||| ||  || |||||||||||||||||| |||||||||| ||| |||||||    
T  39875 tgaaaattaccttatcattggcatcttcgatcatactatgattattttcaaagatgactataaatcctttctcatgtaattg 39956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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