View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9543H-LTR4-TNT-insertion-1 (Length: 444)
Name: F9543H-LTR4-TNT-insertion-1
Description: F9543H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9543H-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Complemental strand, 1570218 - 1569792
Alignment:
| Q |
8 |
cccacatgttgccacattcatcaacacttcaacaaagtagttcttcagtccaatcccatttgacaaaacccttgttaagtaagggtttacaaaaaataaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1570218 |
cccacatgttgccacattcatcaacacttcaacaaagtagttcttcagtccaatcccatttgacaaaacccttgttaagtaagggtttacaaaaaataaa |
1570119 |
T |
|
| Q |
108 |
atggatcttaataatatacaagtgagctacattttttggcatcctaatccaaggtgtcaatctctcaaccccctaatgccaaatcagcaaaatgttcaag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1570118 |
atggatcttaataatatacaagtgagctacattttttggcatcctaatccaaggtgtcaatctctcaaccccctaatgccaaatcagcaaaatgttcaag |
1570019 |
T |
|
| Q |
208 |
tacaaaaaatgatcaaaattagcaatgtggatcagaaaactacatttgaaattaaaaattctcatttttattcattttgattatataaattttgaattgc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1570018 |
tacaaaaaatgatcaaaattagcaatgtggatcagaaaactacatttgaaattaaaaattctcatttttattcattttgattatataaattttgaattgc |
1569919 |
T |
|
| Q |
308 |
tggatttccagccatcaaacctcattttcggaccacatattaagtaacaaacaaaacaaattaaaacccaggcccagttggtagtccagcccaatactca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1569918 |
tggatttccagccatcaaacctcattttcggaccacatattaagtaacaaacaaaacaaattaaaacccaggcccagttggtagtccagcccaatactca |
1569819 |
T |
|
| Q |
408 |
accctcttctccttttcagagacatta |
434 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
1569818 |
accctcttctccttttcagagacatta |
1569792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 112 - 434
Target Start/End: Original strand, 33776242 - 33776564
Alignment:
| Q |
112 |
atcttaataatatacaagtgagctacattttttggcatcctaatccaaggtgtcaatctctcaaccccctaatgccaaatcagcaaaatgttcaagtaca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33776242 |
atcttaataatatacaagtgagctacattttttggcatcctaatccaaggtgtcaatctctcaaccccctaatgccaaatcagcaaaatgttcaagtaca |
33776341 |
T |
|
| Q |
212 |
aaaaatgatcaaaattagcaatgtggatcagaaaactacatttgaaattaaaaattctcatttttattcattttgattatataaattttgaattgctgga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33776342 |
aaaaatgatcaaaattagcaatgtggatcagaaaactacatttgaaattaaaaattctcatttttattcattttgattatataaattttgaattgctgga |
33776441 |
T |
|
| Q |
312 |
tttccagccatcaaacctcattttcggaccacatattaagtaacaaacaaaacaaattaaaacccaggcccagttggtagtccagcccaatactcaaccc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33776442 |
tttccagccatcaaacctcattttcggaccacatattaagtaacaaacaaaacaaattaaaacccaggcccagttggtagtccagcccaatactcaaccc |
33776541 |
T |
|
| Q |
412 |
tcttctccttttcagagacatta |
434 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
33776542 |
tcttctccttttcagagacatta |
33776564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 193
Target Start/End: Original strand, 6799655 - 6799736
Alignment:
| Q |
112 |
atcttaataatatacaagtgagctacattttttggcatcctaatccaaggtgtcaatctctcaaccccctaatgccaaatca |
193 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| ||| | | |||||||||||||||||||||||||||| |||| |
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|
| T |
6799655 |
atcttaataatatacaagccccctacattttttaacatcccaataccatgtgtcaatctctcaaccccctaatgccacatca |
6799736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 6799521 - 6799572
Alignment:
| Q |
134 |
ctacattttttggcatcctaatccaaggtgtcaatctctcaaccccctaatg |
185 |
Q |
| |
|
||||||||||| |||||| ||| ||| ||||||||||||||||||||||||| |
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|
| T |
6799521 |
ctacattttttagcatcccaatacaatgtgtcaatctctcaaccccctaatg |
6799572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 30177365 - 30177443
Alignment:
| Q |
8 |
cccacatgttgccacattcatcaacacttcaacaaagtagttcttcagtccaatcccatttgacaaaacccttgttaag |
86 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| |||| |
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| T |
30177365 |
cccacatgttgtcacactcatcaacacttcaacaaagtagttcttatgtccagtcccattcgacaaaacccttggtaag |
30177443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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