View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9543H-LTR4-TNT-insertion-2 (Length: 569)
Name: F9543H-LTR4-TNT-insertion-2
Description: F9543H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9543H-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 8 - 559
Target Start/End: Complemental strand, 43017056 - 43016505
Alignment:
| Q |
8 |
cgtgcttgatatatagatgcttgttactatcacgtaatatcccatcaagatcatcaaatgactatcttcttgcctacccctttctcttttcccttccgtt |
107 |
Q |
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| T |
43017056 |
cgtgcttgatatatagatgcttgttactatcacgtaatatcccatcaagatcatcaaatgactatcttcttgcctacccctttctcttttcccttccgtt |
43016957 |
T |
|
| Q |
108 |
ttctttgcttccaccagcgaatgaaaacggtgtcaaaagctcacgactgtgtttgggggttttctactggtgtgtcaagctgcagccctgattggttctg |
207 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43016956 |
ttcttttcttccaccagcgaatgaaaacggtgtcaaaagctcacgactgtgtttgggggttttctactggtgtgtcaagctgcagccctgattggttctg |
43016857 |
T |
|
| Q |
208 |
tgtttggaattgattgctttgggagctctctcctgtttcttgcattcagttttctgtacaaaaaacagtttccagaggtgtcttggacttcttgtaagtg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43016856 |
tgtttggaattgattgctttgggagctctctcctgtttcttgcattcagttttctgtacaaaaaacagtttccagaggtgtcttggacttcttgtaagtg |
43016757 |
T |
|
| Q |
308 |
tggatttttctttggtaaatatagtgtaaataaagctactaaaagtaaaatgtggcacacatatggctgtttcaagataacaaaaacagattatctataa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43016756 |
tggatttttctttggtaaatatagtgtaaataaagctactaaaagtaaaatgtggcacacatatggctgtttcaagataacaaaaacagattatctataa |
43016657 |
T |
|
| Q |
408 |
taatgattttnnnnnnntagtaacgttattttagcccaagcgtgacagagtgtgtggagatatttagtttagtttgcctacttttgttttcatgaaaata |
507 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43016656 |
taatgattttaaaaaaatagtaacgttattttagcccaagcgtgacagagtgtgtggagatatttagtttagtttgcctacttttgttttcatgaaaata |
43016557 |
T |
|
| Q |
508 |
cggtttacatctatatacagcatcgaaaataagagaaaaaataaacatatta |
559 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43016556 |
cggtttacatctatatacagcatcgaaaataagagaaaaaataaacatatta |
43016505 |
T |
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