View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9630H-LTR4-TNT-insertion-1 (Length: 410)
Name: F9630H-LTR4-TNT-insertion-1
Description: F9630H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9630H-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 375
Target Start/End: Complemental strand, 34062524 - 34062159
Alignment:
| Q |
10 |
atcttaacattatttatacttatattgaattaactatattatgaaaatcactaaatggctagacatcttatcgctatttctctttattctgtgttaaagc |
109 |
Q |
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| T |
34062524 |
atcttaacattatttatacttatattgaattaactatattatgaaaatcactaaatggctagacatcttatcgctatttctctttattctgtgttaaagc |
34062425 |
T |
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| Q |
110 |
ttttccaacactattatattttcacacacagaatatgccttgctacactatgtggctttaaaattggttccaaatgttccacaacattagtgatattttc |
209 |
Q |
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| T |
34062424 |
ttttccaacactattatattttcacacacagaatatgccttgctacactatgtggctttaaaattggttccaaatgttccacaacattagtgatattttc |
34062325 |
T |
|
| Q |
210 |
aaagtacgtacatgctagagtgctttgagtgattgtttgataaaataatttgtagcgaatatgattttataaaattagtttagttaaaattgggaatttg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34062324 |
aaagtacgtacatgctagagtgctttgagtgattgtttgataaaataatttgtagcgaatatgattttataaaattagtttagttaaaattgggaatttg |
34062225 |
T |
|
| Q |
310 |
aagtcaattatgtttgannnnnnnnncattccaaatatatagttatcgtaaaatctgatgcgaatt |
375 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34062224 |
aagtcaattatgtttgatttttttttcattccaaatatatagttatcgtaaaatctgatgcgaatt |
34062159 |
T |
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