View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9630H-LTR4-TNT-insertion-10 (Length: 175)
Name: F9630H-LTR4-TNT-insertion-10
Description: F9630H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9630H-LTR4-TNT-insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 2e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 2e-84
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 29703865 - 29704022
Alignment:
| Q |
8 |
gctgatccaaaagaagagggttcagagaatgtcaatcatgtggaggtttcacgtgaggactcaagtttaaatctgcaagacagttttgagacatgtgctg |
107 |
Q |
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| T |
29703865 |
gctgatccaaaagaagagggttcagagaatgtcaatcatgtggaggtttcacgtgaggactcaagtttaaatctgcaagacagttttgagacatgtgctg |
29703964 |
T |
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| Q |
108 |
attcaaatgaagcaggtttgttttgcaatatgcttgtggttcttatctattgctatta |
165 |
Q |
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| T |
29703965 |
attcaaatgaagcaggtttgttttgcaatatgcttgtggttcttatctattgctatta |
29704022 |
T |
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