View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9630H-LTR4-TNT-insertion-12 (Length: 636)
Name: F9630H-LTR4-TNT-insertion-12
Description: F9630H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9630H-LTR4-TNT-insertion-12 |
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Alignment Details
Target: chr2 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 9 - 629
Target Start/End: Original strand, 41640478 - 41641098
Alignment:
| Q |
9 |
caagactgtgtgaaggcccaaggatttgcctgtctgtatattgcggatactgtcatcaaagaacaactgcaaaaagcaaagtaaataaatacataatttg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41640478 |
caagactgtgtgaaggcccaaggatttgcctgtctgtatattgcggatactgtcatcaaagaacaactgcaaaaagcaaagtaaataaatacataatttg |
41640577 |
T |
|
| Q |
109 |
atgatctgactagatagcacataatcaaaaatatgctcataacaaaaatcttactgttctttgagggtcaatgtctgccatcttaaaaaccttttcaaat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41640578 |
atgatctgactagatagcacataatcaaaaatatgctcataacaaaaatcttactgttctttgagggtcaatgtctgccatcttaaaaaccttttcaaat |
41640677 |
T |
|
| Q |
209 |
gcatcttgaaagggtttacaaacaactggggtctttggaagcacaatattagcatcaggcctacaaatgtactcataaaaatcaaatatttctgtggaac |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41640678 |
gcatcttgaaagggtttacaaacaactggggtctttggaagcacaatattagcatcaggcctacaaatgtactcataaaaatcaaatatttctgtggaac |
41640777 |
T |
|
| Q |
309 |
tttgtttatattcattgctatctttgttgtgaggagaattgatgttattggacttggaggaatttagtgtctcaaagcttatgattctctcaaaacaatc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41640778 |
tttgtttatattcattgctatctttgttgtgaggagaattgatgttattggacttggaggaatttagtgtctcaaagcttatgattctctcaaaacaatc |
41640877 |
T |
|
| Q |
409 |
ctctagtccaagcctttgaagcactctatttgcatgtgcatcgtccgagtttgtaaaaacctattggaaaataaaaaatattgttagctataatttatga |
508 |
Q |
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| T |
41640878 |
ctctagtccaagcctttgaagcactctatttgcatgtgcatcgtccgagtttgtaaaaacctattggaaaataaaaaatattgttagctataatttatga |
41640977 |
T |
|
| Q |
509 |
attatgaccatgtttggataaacaacttaataaagcgtttgtaacatggttttaaattgcagccgcggatgcggttgaagccattgcgaaaaataacaag |
608 |
Q |
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| T |
41640978 |
attatgaccatgtttggataaacaacttaataaagcgtttgtaacatggttttaaattgcagccgcggatgcggttgaagccattgcgaaaaataacaag |
41641077 |
T |
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| Q |
609 |
ttgcggatactaccgcaattg |
629 |
Q |
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| T |
41641078 |
ttgcggatactaccgcaattg |
41641098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 24019302 - 24019207
Alignment:
| Q |
157 |
tcttactgttctttgagggtcaatgtctgccatcttaaaaaccttttcaaatgcatcttgaaagggtttacaaacaactggggtctttggaagcac |
252 |
Q |
| |
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| T |
24019302 |
tcttactgttctttgagggtcaatgtcagccaacttgaatgccttttcaaatgcatcttcaaaaggtttgcagacaactggtgtctttggaagcac |
24019207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 24019642 - 24019592
Alignment:
| Q |
38 |
ctgtctgtatattgcggatactgtcatcaaagaacaactgcaaaaagcaaa |
88 |
Q |
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||||||||| |||||||||||||||||| ||||||||||| ||| |||||| |
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| T |
24019642 |
ctgtctgtaaattgcggatactgtcatcgaagaacaactgaaaagagcaaa |
24019592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 23969303 - 23969361
Alignment:
| Q |
157 |
tcttactgttctttgagggtcaatgtctgccatcttaaaaaccttttcaaatgcatctt |
215 |
Q |
| |
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||||| |||||||||||||||||| ||||||| || ||| |||| ||||||||||||| |
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| T |
23969303 |
tcttattgttctttgagggtcaatatctgccaatttgaaagccttatcaaatgcatctt |
23969361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 541
Target Start/End: Complemental strand, 1471034 - 1471004
Alignment:
| Q |
511 |
tatgaccatgtttggataaacaacttaataa |
541 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
1471034 |
tatgaccatgtttggataaacaacttaataa |
1471004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 555
Target Start/End: Original strand, 2519582 - 2519619
Alignment:
| Q |
518 |
atgtttggataaacaacttaataaagcgtttgtaacat |
555 |
Q |
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|||||||||||||||||||||| |||||||| |||||| |
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| T |
2519582 |
atgtttggataaacaacttaatcaagcgtttataacat |
2519619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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