View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9630H-LTR4-TNT-insertion-16 (Length: 355)

Name: F9630H-LTR4-TNT-insertion-16
Description: F9630H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9630H-LTR4-TNT-insertion-16
F9630H-LTR4-TNT-insertion-16
[»] chr7 (5 HSPs)
chr7 (8-346)||(23057543-23057881)
chr7 (8-157)||(23035209-23035358)
chr7 (8-157)||(23026405-23026554)
chr7 (8-111)||(23091939-23092042)
chr7 (11-127)||(23069110-23069226)
[»] chr1 (2 HSPs)
chr1 (279-340)||(8282326-8282387)
chr1 (266-346)||(18389846-18389927)
[»] chr3 (3 HSPs)
chr3 (276-336)||(3444753-3444813)
chr3 (8-60)||(30706227-30706279)
chr3 (290-338)||(31650097-31650145)
[»] chr8 (1 HSPs)
chr8 (276-346)||(12240579-12240649)
[»] chr4 (2 HSPs)
chr4 (266-336)||(18006399-18006469)
chr4 (301-340)||(10197965-10198004)
[»] chr2 (2 HSPs)
chr2 (266-336)||(20645938-20646008)
chr2 (291-340)||(31587881-31587930)


Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 346
Target Start/End: Complemental strand, 23057881 - 23057543
Alignment:
Q  8 cttccatatccagattcttttagaagtgggtatgctagttgacaaagatggtaaccagactcaaaatttgtacccattgtagttactatatcttcagcag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23057881 cttccatatccagattcttttagaagtgggtatgctagttgacaaagatggtaaccagactcaaaatttgtacccattgtagttactatatcttcagcag 23057782  T
Q  108 tatactctagtattttcttatgtgtacatgtggcagcattgtttacctaacaaataaatataaaaatacatcacttataaccgtgatttgactgaaaatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23057781 tatactctagtattttcttatgtgtacatgtggcagcattgtttacctaacaaataaatataaaaatacatcacttataaccgtgatttgactgaaaatt 23057682  T
Q  208 agataaatgggagaattttaaaataataaccgaatttcagtcgcatatatgattgtttggaaggacgaaaaacctaattcactattgaagccatcatatc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23057681 agataaatgggagaattttaaaataataaccgaatttcagtcgcatatatgattgtttggaaggacgaaaaacctaattcactattgaagccatcatatc 23057582  T
Q  308 aaaaatagattttttagggttttgagtctttgtcaattg 346  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23057581 aaaaatagattttttagggttttgagtctttgtcaattg 23057543  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 23035358 - 23035209
Alignment:
Q  8 cttccatatccagattcttttagaagtgggtatgctagttgacaaagatggtaaccagactcaaaatttgtacccattgtagttactatatcttcagcag 107  Q
    |||||||||||||||| ||||||||| || | ||| |||||||| | ||||||||||||| ||||||||||||||| ||||||   |||||||||| |||    
T  23035358 cttccatatccagattgttttagaagaggatgtgcaagttgacacaaatggtaaccagacacaaaatttgtacccaatgtagtgtttatatcttcatcag 23035259  T
Q  108 tatactctagtattttcttatgtgtacatgtggcagcattgtttacctaa 157  Q
    |||  |||| ||||||||||  ||||  | | ||||||||||||||||||    
T  23035258 tattatctattattttcttacttgtaggttttgcagcattgtttacctaa 23035209  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 23026554 - 23026405
Alignment:
Q  8 cttccatatccagattcttttagaagtgggtatgctagttgacaaagatggtaaccagactcaaaatttgtacccattgtagttactatatcttcagcag 107  Q
    |||||||||||||||| ||||||||| || | ||| |||||||| | ||||||||||||| ||||||||||||||| ||||||   |||||||||| |||    
T  23026554 cttccatatccagattgttttagaagaggatgtgcaagttgacacaaatggtaaccagacacaaaatttgtacccaatgtagtgtttatatcttcatcag 23026455  T
Q  108 tatactctagtattttcttatgtgtacatgtggcagcattgtttacctaa 157  Q
    |||  |||| ||||||||||   |||  | | ||||||||||||||||||    
T  23026454 tattatctattattttcttactggtaggttttgcagcattgtttacctaa 23026405  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 23092042 - 23091939
Alignment:
Q  8 cttccatatccagattcttttagaagtgggtatgctagttgacaaagatggtaaccagactcaaaatttgtacccattgtagttactatatcttcagcag 107  Q
    |||||||||||||||| ||||||||| || | ||| |||||||| | |||||||| |||| ||||||| ||||| ||||||| | ||||||||||| |||    
T  23092042 cttccatatccagattgttttagaagaggatgtgcaagttgacacaaatggtaactagacacaaaattggtaccaattgtagatgctatatcttcatcag 23091943  T
Q  108 tata 111  Q
    ||||    
T  23091942 tata 23091939  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 23069226 - 23069110
Alignment:
Q  11 ccatatccagattcttttagaagtgggtatgctagttgacaaagatggtaaccagactcaaaatttgtacccattgtagttactatatcttcagcagtat 110  Q
    ||||||||||||||||||| |||||||| ||| |||||||| | |||||||| ||| ||||| ||  ||||||||||| ||   | ||||||||||||||    
T  23069226 ccatatccagattcttttaaaagtgggtgtgcaagttgacacaaatggtaactagattcaaagttaatacccattgtatttgtcacatcttcagcagtat 23069127  T
Q  111 actctagtattttctta 127  Q
      ||||| ||| |||||    
T  23069126 gttctagcattgtctta 23069110  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 8282387 - 8282326
Alignment:
Q  279 acctaattcactattgaagccatcatatcaaaaatagattttttagggttttgagtctttgt 340  Q
    |||||||||| |||| ||||| || |||||| |||||| |||||||||||||||||||||||    
T  8282387 acctaattcattattcaagccgtcgtatcaagaatagagtttttagggttttgagtctttgt 8282326  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 346
Target Start/End: Original strand, 18389846 - 18389927
Alignment:
Q  266 ggaaggacgaaaaacctaattcactattgaagccatcatatcaaaaataga-ttttttagggttttgagtctttgtcaattg 346  Q
    |||| |||| |||||||||||||  | ||||||| |||||||||||||| | ||||||||| |||| ||||| ||| |||||    
T  18389846 ggaatgacgcaaaacctaattcatcagtgaagccgtcatatcaaaaatatagttttttaggattttaagtctctgttaattg 18389927  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 276 - 336
Target Start/End: Original strand, 3444753 - 3444813
Alignment:
Q  276 aaaacctaattcactattgaagccatcatatcaaaaatagattttttagggttttgagtct 336  Q
    |||| ||||||||  | ||||| | ||||||||||||||||||||||||||||||||||||    
T  3444753 aaaatctaattcatcactgaagtcgtcatatcaaaaatagattttttagggttttgagtct 3444813  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 30706227 - 30706279
Alignment:
Q  8 cttccatatccagattcttttagaagtgggtatgctagttgacaaagatggta 60  Q
    ||||||| |||||||||||| ||||| || |||||||||||||| ||||||||    
T  30706227 cttccatttccagattctttaagaagaggatatgctagttgacatagatggta 30706279  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 31650145 - 31650097
Alignment:
Q  290 tattgaagccatcatatcaaaaatagattttttagggttttgagtcttt 338  Q
    |||| ||||| ||||||||| |||||| |||||| ||||||||||||||    
T  31650145 tattcaagccgtcatatcaagaatagagtttttaaggttttgagtcttt 31650097  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 346
Target Start/End: Complemental strand, 12240649 - 12240579
Alignment:
Q  276 aaaacctaattcactattgaagccatcatatcaaaaatagattttttagggttttgagtctttgtcaattg 346  Q
    ||||| |||||||  ||||||| | |||||| ||||||||| ||||||||||||||||||| ||| |||||    
T  12240649 aaaacataattcataattgaagtcgtcatattaaaaatagagtttttagggttttgagtctctgttaattg 12240579  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 336
Target Start/End: Original strand, 18006399 - 18006469
Alignment:
Q  266 ggaaggacgaaaaacctaattcactattgaagccatcatatcaaaaatagattttttagggttttgagtct 336  Q
    ||||||||| ||||||||||| |  |   ||||| |||||||||||||||| |||||||||||||||||||    
T  18006399 ggaaggacgcaaaacctaatttatcacccaagccgtcatatcaaaaatagagtttttagggttttgagtct 18006469  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 340
Target Start/End: Original strand, 10197965 - 10198004
Alignment:
Q  301 tcatatcaaaaatagattttttagggttttgagtctttgt 340  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  10197965 tcatatcaagaatagagtttttagggttttgagtctttgt 10198004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 336
Target Start/End: Original strand, 20645938 - 20646008
Alignment:
Q  266 ggaaggacgaaaaacctaattcactattgaagccatcatatcaaaaatagattttttagggttttgagtct 336  Q
    ||||||||| ||||||||||| |  |   ||||| |||||||||||||||| |||||||||||||||||||    
T  20645938 ggaaggacgcaaaacctaatttatcacccaagccgtcatatcaaaaatagagtttttagggttttgagtct 20646008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 31587930 - 31587881
Alignment:
Q  291 attgaagccatcatatcaaaaatagattttttagggttttgagtctttgt 340  Q
    ||||||||| |||||||||||||||  ||||||||||| |||||||||||    
T  31587930 attgaagccgtcatatcaaaaatagggtttttagggttgtgagtctttgt 31587881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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