View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9630H-LTR4-TNT-insertion-18 (Length: 450)

Name: F9630H-LTR4-TNT-insertion-18
Description: F9630H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9630H-LTR4-TNT-insertion-18
F9630H-LTR4-TNT-insertion-18
[»] chr6 (13 HSPs)
chr6 (9-440)||(35094758-35095189)
chr6 (194-309)||(33787761-33787876)
chr6 (193-254)||(35070482-35070543)
chr6 (265-324)||(24774682-24774741)
chr6 (266-324)||(13360659-13360717)
chr6 (194-333)||(32386579-32386718)
chr6 (262-319)||(24836283-24836340)
chr6 (272-323)||(10452454-10452505)
chr6 (262-324)||(8349748-8349810)
chr6 (262-324)||(29269820-29269882)
chr6 (274-324)||(31668781-31668831)
chr6 (262-318)||(20671949-20672005)
chr6 (265-321)||(32975905-32975961)
[»] chr8 (11 HSPs)
chr8 (262-324)||(14482126-14482188)
chr8 (265-324)||(39392748-39392807)
chr8 (274-332)||(5226518-5226576)
chr8 (263-333)||(8062230-8062300)
chr8 (284-333)||(43208239-43208288)
chr8 (272-324)||(35869761-35869813)
chr8 (262-318)||(42597331-42597387)
chr8 (193-248)||(14247239-14247294)
chr8 (263-332)||(4558714-4558783)
chr8 (193-242)||(20672756-20672805)
chr8 (196-228)||(1433568-1433600)
[»] chr7 (18 HSPs)
chr7 (262-323)||(30496629-30496690)
chr7 (263-324)||(49060464-49060525)
chr7 (265-332)||(753291-753358)
chr7 (262-309)||(1417203-1417250)
chr7 (265-324)||(18749897-18749956)
chr7 (263-326)||(30751439-30751502)
chr7 (272-323)||(46213728-46213779)
chr7 (262-332)||(11721310-11721380)
chr7 (262-332)||(24973860-24973930)
chr7 (194-228)||(25596053-25596087)
chr7 (282-332)||(45078209-45078259)
chr7 (282-323)||(27492720-27492761)
chr7 (265-326)||(45593806-45593867)
chr7 (262-310)||(2012698-2012746)
chr7 (262-310)||(2030647-2030695)
chr7 (265-325)||(7244625-7244685)
chr7 (161-221)||(12234872-12234932)
chr7 (272-324)||(47006972-47007024)
[»] scaffold0590 (1 HSPs)
scaffold0590 (265-332)||(1161-1228)
[»] scaffold0275 (1 HSPs)
scaffold0275 (265-332)||(2747-2814)
[»] chr1 (11 HSPs)
chr1 (262-328)||(44032083-44032149)
chr1 (272-324)||(23895260-23895312)
chr1 (161-228)||(30259469-30259536)
chr1 (262-309)||(34619462-34619509)
chr1 (274-324)||(870969-871019)
chr1 (274-324)||(6659627-6659677)
chr1 (263-333)||(36641790-36641860)
chr1 (263-316)||(26184683-26184736)
chr1 (264-325)||(36602713-36602774)
chr1 (192-228)||(7472331-7472367)
chr1 (263-307)||(52559913-52559957)
[»] chr5 (20 HSPs)
chr5 (194-296)||(18875313-18875415)
chr5 (262-332)||(11835192-11835263)
chr5 (263-326)||(19113202-19113265)
chr5 (265-324)||(35960338-35960397)
chr5 (262-324)||(35095867-35095929)
chr5 (270-319)||(29588809-29588858)
chr5 (265-309)||(37063161-37063205)
chr5 (265-332)||(28586853-28586920)
chr5 (263-310)||(40097147-40097194)
chr5 (263-309)||(6593239-6593285)
chr5 (161-223)||(10272414-10272476)
chr5 (266-320)||(11095557-11095611)
chr5 (266-324)||(20982223-20982281)
chr5 (263-324)||(6738492-6738553)
chr5 (265-322)||(7096214-7096271)
chr5 (194-223)||(10296436-10296465)
chr5 (262-302)||(10303747-10303787)
chr5 (272-324)||(13224353-13224405)
chr5 (276-332)||(14714937-14714993)
chr5 (272-324)||(26516222-26516274)
[»] chr2 (21 HSPs)
chr2 (263-332)||(31461354-31461423)
chr2 (262-326)||(35459832-35459896)
chr2 (265-332)||(3102609-3102676)
chr2 (265-332)||(9878026-9878093)
chr2 (271-326)||(32837233-32837288)
chr2 (161-228)||(34652019-34652086)
chr2 (265-324)||(37033968-37034027)
chr2 (265-324)||(37053518-37053577)
chr2 (163-218)||(43635086-43635141)
chr2 (275-309)||(7936965-7936999)
chr2 (266-332)||(33197327-33197393)
chr2 (274-324)||(43133890-43133940)
chr2 (272-309)||(41240971-41241008)
chr2 (262-326)||(3673729-3673793)
chr2 (276-324)||(7193950-7193998)
chr2 (272-324)||(10190203-10190255)
chr2 (272-332)||(14209193-14209253)
chr2 (272-324)||(15780003-15780055)
chr2 (272-324)||(32694137-32694188)
chr2 (266-326)||(35329907-35329967)
chr2 (269-309)||(41809334-41809374)
[»] chr4 (20 HSPs)
chr4 (272-332)||(11262847-11262907)
chr4 (274-324)||(45128406-45128456)
chr4 (262-327)||(30024621-30024686)
chr4 (275-327)||(4191660-4191712)
chr4 (272-324)||(24443962-24444014)
chr4 (265-324)||(54325124-54325183)
chr4 (266-324)||(54277402-54277460)
chr4 (262-295)||(20105917-20105950)
chr4 (275-332)||(24193501-24193558)
chr4 (263-296)||(49219091-49219124)
chr4 (282-326)||(2980575-2980619)
chr4 (263-334)||(23503472-23503544)
chr4 (196-228)||(24169283-24169315)
chr4 (271-319)||(24936239-24936287)
chr4 (265-325)||(36734816-36734876)
chr4 (265-321)||(47970245-47970301)
chr4 (265-309)||(51044546-51044590)
chr4 (157-221)||(52052502-52052565)
chr4 (196-248)||(52259631-52259683)
chr4 (262-322)||(54986348-54986407)
[»] scaffold0654 (1 HSPs)
scaffold0654 (262-324)||(6721-6783)
[»] scaffold0091 (1 HSPs)
scaffold0091 (274-332)||(5935-5993)
[»] scaffold0014 (1 HSPs)
scaffold0014 (262-324)||(116640-116702)
[»] chr3 (18 HSPs)
chr3 (262-324)||(50016042-50016104)
chr3 (262-322)||(47217283-47217343)
chr3 (272-324)||(48528502-48528554)
chr3 (265-324)||(44284145-44284204)
chr3 (193-223)||(3044274-3044304)
chr3 (193-223)||(25925767-25925797)
chr3 (263-305)||(34318031-34318073)
chr3 (266-324)||(41028939-41028997)
chr3 (262-324)||(44374728-44374790)
chr3 (263-308)||(1395611-1395656)
chr3 (265-326)||(27792794-27792855)
chr3 (263-324)||(33307665-33307726)
chr3 (265-334)||(51278244-51278313)
chr3 (265-326)||(52450139-52450200)
chr3 (272-332)||(16790182-16790242)
chr3 (196-228)||(24280731-24280763)
chr3 (192-220)||(32064467-32064495)
chr3 (266-322)||(34958254-34958310)
[»] scaffold0015 (1 HSPs)
scaffold0015 (263-308)||(69028-69073)
[»] scaffold0100 (1 HSPs)
scaffold0100 (273-325)||(42540-42592)


Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 9 - 440
Target Start/End: Original strand, 35094758 - 35095189
Alignment:
Q  9 tttcttattcgacgaacatgctcctaaaggggctccacacagcttttcattacctgcgctgaccatcatttcgtatcaatatgcatgtttggatcaacta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35094758 tttcttattcgacgaacatgctcctaaaggggctccacacagcttttcattacctgcgctgaccatcatttcgtatcaatatgcatgtttggatcaacta 35094857  T
Q  109 atttgagttttatctacagacaaaaatattcgtaagannnnnnngataaaaacttatagaaaaaacttaagacatgtgtgtagactgttttcaacttatt 208  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35094858 atttgagttttatctacagacaaaaatattcgtaagatttttttgataaaaacttatagaaaaaacttaagacatgtgtgtagactgttttcaacttatt 35094957  T
Q  209 ttcataagctctccacgatatcatacaaaaacagcatataacttgtnnnnnnncaatttgacattattttatattttgttatagaaatggtttatacata 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  35094958 ttcataagctctccacgatatcatacaaaaacagcatataacttgtaaaaaaacaatttgacattattttatattttgttatagaaatggtttatacata 35095057  T
Q  309 attacttatatgataaacgtttatatatgctataagtgtttaaactgtttatccataaaaggtattatatacattgctaaactagcttatctctttcttt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35095058 attacttatatgataaacgtttatatatgctataagtgtttaaactgtttatccataaaaggtattatatacattgctaaactagcttatctctttcttt 35095157  T
Q  409 gatgaatgaaatccacatttattctttgaatt 440  Q
    ||||||||||||||||||||||||||||||||    
T  35095158 gatgaatgaaatccacatttattctttgaatt 35095189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 33787761 - 33787876
Alignment:
Q  194 tgttttcaacttattttcataagctctccacgatatcatacaaaaacagcatataacttgtnnnnnnncaatttgacattattttatattttgttataga 293  Q
    |||||||| | ||||| ||||||||||||| |||| | ||  |||||||| |||||||| |       ||||||||| || |||||||||||||||||||    
T  33787761 tgttttcagcctatttccataagctctccaagataacttatgaaaacagcttataacttatatgaaatcaatttgactttgttttatattttgttataga 33787860  T
Q  294 aatggtttatacataa 309  Q
    ||| ||||||||||||    
T  33787861 aatagtttatacataa 33787876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 35070482 - 35070543
Alignment:
Q  193 ctgttttcaacttattttcataagctctccacgatatcatacaaaaacagcatataacttgt 254  Q
    ||||||||||||||||||||||||||||| |  ||| | |||||||||||| ||||||||||    
T  35070482 ctgttttcaacttattttcataagctctcaaacatagcttacaaaaacagcttataacttgt 35070543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 24774741 - 24774682
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    |||||| ||||||||||||||||||||||||| ||||||| ||||  ||||| |||||||    
T  24774741 tttgactttattttatattttgttatagaaatagtttatatataagcacttacatgataa 24774682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 324
Target Start/End: Complemental strand, 13360717 - 13360659
Alignment:
Q  266 ttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||| ||||||||||||||||||||||||| ||||  ||||||  |||||||||||||    
T  13360717 ttgactttattttatattttgttatagaaatagtttgcacataagcacttatatgataa 13360659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 333
Target Start/End: Original strand, 32386579 - 32386718
Alignment:
Q  194 tgttttcaacttattttcataagctctccacgatatcatacaaaaacagcatataacttgtnnnnnnncaatttgacattattttatattttgttataga 293  Q
    |||||||| ||||||||||||||||||||| |||| |  |  |||||| | |||| ||| |       ||||||||| ||||||||| |||| |||  ||    
T  32386579 tgttttcagcttattttcataagctctccaggataactaatgaaaacaacgtataccttatatgaaaacaatttgaccttattttatcttttcttagtga 32386678  T
Q  294 aatggtttatacataattacttatatgataaacgtttata 333  Q
    ||| || |||||||||  ||||||||||||||| ||||||    
T  32386679 aatagtctatacataagcacttatatgataaacatttata 32386718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 24836283 - 24836340
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttatat 319  Q
    ||||||||| ||||||||| |||||||||||||||   |||||||||| |||||||||    
T  24836283 caatttgactttattttatcttttgttatagaaataacttatacataaatacttatat 24836340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 10452454 - 10452505
Alignment:
Q  272 ttattttatattttgttatagaaatggtttatacataattacttatatgata 323  Q
    ||||||||||||||||||||||||| | ||||||||||  ||| ||||||||    
T  10452454 ttattttatattttgttatagaaatagcttatacataagcactgatatgata 10452505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 8349748 - 8349810
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    |||||| || ||||||||| |||||||| |||||| ||||||||| ||  |||||||||||||    
T  8349748 caatttaactttattttatcttttgttagagaaatagtttatacacaaacacttatatgataa 8349810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 29269882 - 29269820
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||||| ||||||||| || |||||||||||| ||||||||| ||  | |||||||||||    
T  29269882 caatttgactttattttatcttctgttatagaaatagtttatacacaagcatttatatgataa 29269820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 31668781 - 31668831
Alignment:
Q  274 attttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||| ||||||||||||||| | ||||||||||  |||||||||||||    
T  31668781 attttatgttttgttatagaaatagcttatacataagcacttatatgataa 31668831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 20671949 - 20672005
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttata 318  Q
    ||||||||| ||||||||| ||||| | ||||||| | ||||||||||| |||||||    
T  20671949 caatttgactttattttatcttttgatctagaaatagcttatacataatcacttata 20672005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 32975961 - 32975905
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatga 321  Q
    |||||| |||||||||||||||||| ||||||   ||||||||||  ||||||||||    
T  32975961 tttgactttattttatattttgttacagaaataacttatacataaacacttatatga 32975905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 14482188 - 14482126
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||||| ||||||||| ||||||||||||||| ||||||||||||  |||||||||||||    
T  14482188 caatttgactttattttatcttttgttatagaaatagtttatacataagcacttatatgataa 14482126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 39392748 - 39392807
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    |||||| ||||||||| ||||||||||||||| |||||||||||   |||||||||||||    
T  39392748 tttgactttattttatcttttgttatagaaatagtttatacatagccacttatatgataa 39392807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 332
Target Start/End: Complemental strand, 5226576 - 5226518
Alignment:
Q  274 attttatattttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    ||||||| ||||||||| ||||| ||||||||||||  |||||||||||||| ||||||    
T  5226576 attttatcttttgttattgaaattgtttatacataaacacttatatgataaatgtttat 5226518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 333
Target Start/End: Complemental strand, 8062300 - 8062230
Alignment:
Q  263 aatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaacgtttata 333  Q
    |||||||| |||||||||  ||||||||||||| ||| |||||||||  |||| ||||||||||| |||||    
T  8062300 aatttgactttattttatcatttgttatagaaagggtgtatacataaacacttctatgataaacgcttata 8062230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 43208239 - 43208288
Alignment:
Q  284 ttgttatagaaatggtttatacataattacttatatgataaacgtttata 333  Q
    ||||||||||||| | |||||||||| |||||||||||| ||||||||||    
T  43208239 ttgttatagaaatagcttatacataaatacttatatgatgaacgtttata 43208288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 35869813 - 35869761
Alignment:
Q  272 ttattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||||||||||||| ||||||| | ||||||||||  |||||||||||||    
T  35869813 ttattttatattttgttgtagaaatcgcttatacataagaacttatatgataa 35869761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 42597387 - 42597331
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttata 318  Q
    |||||| || ||||||||| ||||||||||||||| | |||||||||| ||||||||    
T  42597387 caattttactttattttatcttttgttatagaaatagcttatacataagtacttata 42597331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 14247239 - 14247294
Alignment:
Q  193 ctgttttcaacttattttcataagctctccacgatatcatacaaaaacagcatata 248  Q
    ||||||||| |||||||||||||| |||| |||||||| ||| |||||||| ||||    
T  14247239 ctgttttcagcttattttcataagttctctacgatatcttacgaaaacagcttata 14247294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 332
Target Start/End: Complemental strand, 4558783 - 4558714
Alignment:
Q  263 aatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    ||||| || ||||||||| |||| |||||||||| | ||||||||||  ||||| || ||||||||||||    
T  4558783 aatttaactttattttatcttttattatagaaatagcttatacataaacacttacataataaacgtttat 4558714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 20672805 - 20672756
Alignment:
Q  193 ctgttttcaacttattttcataagctctccacgatatcatacaaaaacag 242  Q
    ||||||||| ||||||||||||||||||||| |||| | || ||||||||    
T  20672805 ctgttttcagcttattttcataagctctccaggatagcttataaaaacag 20672756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 1433600 - 1433568
Alignment:
Q  196 ttttcaacttattttcataagctctccacgata 228  Q
    |||||||||||||||||||||||||||| ||||    
T  1433600 ttttcaacttattttcataagctctccaggata 1433568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 30496690 - 30496629
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttatatgata 323  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||  |||||| |||||    
T  30496690 caatttgactttattttatattttgttatagaaatagtttatacataaacacttatgtgata 30496629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 49060525 - 49060464
Alignment:
Q  263 aatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    |||||||| ||||||||| ||||||||||||||| | |||||||||| ||||||||||||||    
T  49060525 aatttgactttattttattttttgttatagaaatagcttatacataaatacttatatgataa 49060464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 332
Target Start/End: Original strand, 753291 - 753358
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    |||||| |||||| |||||||||||||||||| || |||||| ||   ||||||||||||| ||||||    
T  753291 tttgactttatttcatattttgttatagaaatagtgtatacacaagcgcttatatgataaatgtttat 753358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 1417250 - 1417203
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataa 309  Q
    ||||||||| ||||||||| |||||||||| |||| ||||||||||||    
T  1417250 caatttgactttattttatcttttgttatataaatagtttatacataa 1417203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 18749897 - 18749956
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    |||||| ||| ||||| ||||||||||||||||| || |||| || ||||||||||||||    
T  18749897 tttgactttactttatcttttgttatagaaatgggttttacacaagtacttatatgataa 18749956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 326
Target Start/End: Complemental strand, 30751502 - 30751439
Alignment:
Q  263 aatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaac 326  Q
    |||||||| |||||||||||||||||| | |||| |||||| || ||  |||||||||||||||    
T  30751502 aatttgactttattttatattttgttacaaaaatagtttattcacaagcacttatatgataaac 30751439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 323
Target Start/End: Complemental strand, 46213779 - 46213728
Alignment:
Q  272 ttattttatattttgttatagaaatggtttatacataattacttatatgata 323  Q
    ||||||||||||||||||||||||| | || |||||||  ||||||||||||    
T  46213779 ttattttatattttgttatagaaatagcttttacataagcacttatatgata 46213728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 11721310 - 11721380
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    ||||||||| || |||||  ||||||||||||||| ||||||| | ||  ||||||||||||| |||||||    
T  11721310 caatttgactttcttttaacttttgttatagaaatagtttataaagaaacacttatatgataagcgtttat 11721380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 24973930 - 24973860
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    ||||||||  ||||||||| ||||||||||||||| | || |||||||  ||||||||||| |||| ||||    
T  24973930 caatttgaatttattttatcttttgttatagaaatagcttttacataagcacttatatgatcaacgattat 24973860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 25596087 - 25596053
Alignment:
Q  194 tgttttcaacttattttcataagctctccacgata 228  Q
    |||||||||||||||||||||||||||||| ||||    
T  25596087 tgttttcaacttattttcataagctctccaagata 25596053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 45078259 - 45078209
Alignment:
Q  282 ttttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    |||||||||| |||| | ||||||||||  |||||||||||||||||||||    
T  45078259 ttttgttataaaaatagcttatacataagcacttatatgataaacgtttat 45078209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 27492761 - 27492720
Alignment:
Q  282 ttttgttatagaaatggtttatacataattacttatatgata 323  Q
    ||||||||||||||| ||||||||||||  ||||||||||||    
T  27492761 ttttgttatagaaatagtttatacataagaacttatatgata 27492720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 326
Target Start/End: Original strand, 45593806 - 45593867
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaac 326  Q
    |||||| ||||||||| |||||||| |||||| | ||||||||||  | |||||||||||||    
T  45593806 tttgactttattttatgttttgttacagaaatagcttatacataagcatttatatgataaac 45593867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 2012698 - 2012746
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataat 310  Q
    |||||||||||||||| ||||||||  |||||||| | |||||||||||    
T  2012698 caatttgacattatttaatattttggcatagaaatagcttatacataat 2012746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 2030695 - 2030647
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataat 310  Q
    |||||||||||||||| ||||||||  |||||||| | |||||||||||    
T  2030695 caatttgacattatttaatattttggcatagaaatagcttatacataat 2030647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 325
Target Start/End: Complemental strand, 7244685 - 7244625
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaa 325  Q
    |||||| || |||||| ||||| ||||||||| | ||||||||||  ||||||||||||||    
T  7244685 tttgactttcttttatcttttgatatagaaatagcttatacataagcacttatatgataaa 7244625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 12234872 - 12234932
Alignment:
Q  161 cttatagaaaaaacttaagacatgtgtgtagactgttttcaacttattttcataagctctc 221  Q
    |||||||||| |||||| ||||||| | ||  ||||||||| ||||||| |||||||||||    
T  12234872 cttatagaaacaacttatgacatgtctataagctgttttcagcttatttccataagctctc 12234932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 47007024 - 47006972
Alignment:
Q  272 ttattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    |||||| || ||||||||||||||  ||||||||||||  |||||||||||||    
T  47007024 ttatttgatcttttgttatagaaaaagtttatacataagcacttatatgataa 47006972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 332
Target Start/End: Original strand, 1161 - 1228
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    |||||| ||||||||| ||||||||||||||| | ||||||||||  |||||||||||| ||||||||    
T  1161 tttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttat 1228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 2814 - 2747
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    |||||| ||||||||| ||||||||||||||| | ||||||||||  |||||||||||| ||||||||    
T  2814 tttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttat 2747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 44032083 - 44032149
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaacgt 328  Q
    ||||||||| ||||||||  |||||||||||||| || ||||||||||  |||||||||||||||||    
T  44032083 caatttgactttattttagcttttgttatagaaacggcttatacataaacacttatatgataaacgt 44032149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 23895312 - 23895260
Alignment:
Q  272 ttattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||||| ||||||||||||||| | ||||||||||| |||||||||||||    
T  23895312 ttattttatcttttgttatagaaatagcttatacataataacttatatgataa 23895260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 30259469 - 30259536
Alignment:
Q  161 cttatagaaaaaacttaagacatgtgtgtagactgttttcaacttattttcataagctctccacgata 228  Q
    |||||||||| |||||| |||||||   || | |||||||||||||||| ||||||||||||| ||||    
T  30259469 cttatagaaacaacttacgacatgtcaataaattgttttcaacttatttccataagctctccatgata 30259536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 34619462 - 34619509
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataa 309  Q
    |||||| || ||||||||| ||||||||||||||||| ||||||||||    
T  34619462 caatttaaccttattttatcttttgttatagaaatggcttatacataa 34619509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 871019 - 870969
Alignment:
Q  274 attttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||| |||||||||| |||| ||||||||||||  |||||||||||||    
T  871019 attttatcttttgttataaaaatagtttatacataagcacttatatgataa 870969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 6659677 - 6659627
Alignment:
Q  274 attttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||| ||||| ||||||||| ||||||||||||  |||||||||||||    
T  6659677 attttatcttttgctatagaaatagtttatacataagcacttatatgataa 6659627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 333
Target Start/End: Complemental strand, 36641860 - 36641790
Alignment:
Q  263 aatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaacgtttata 333  Q
    |||||||| ||||||||| |||||||||||||||   ||||| |||| || |||||||||| ||| |||||    
T  36641860 aatttgactttattttatcttttgttatagaaataacttatatataagtaattatatgatacacggttata 36641790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 26184736 - 26184683
Alignment:
Q  263 aatttgacattattttatattttgttatagaaatggtttatacataattactta 316  Q
    |||||||| ||||||||  |||| |||||||||| |||||||||||| ||||||    
T  26184736 aatttgactttattttaccttttcttatagaaatagtttatacataagtactta 26184683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 36602774 - 36602713
Alignment:
Q  264 atttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaa 325  Q
    ||||||| ||||||||| | ||||| |||| || | ||||||||||| ||||||||||||||    
T  36602774 atttgactttattttatctattgttgtagatatagcttatacataatcacttatatgataaa 36602713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 7472367 - 7472331
Alignment:
Q  192 actgttttcaacttattttcataagctctccacgata 228  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  7472367 actgttttcagcttattttcataagctctccaagata 7472331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 52559913 - 52559957
Alignment:
Q  263 aatttgacattattttatattttgttatagaaatggtttatacat 307  Q
    |||||||| |||||||||||||||||||||| ||  |||||||||    
T  52559913 aatttgactttattttatattttgttatagatataatttatacat 52559957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 18875415 - 18875313
Alignment:
Q  194 tgttttcaacttattttcataagctctccacgatatcatacaaaaacagcatataacttgtnnnnnnncaatttgacattattttatattttgttataga 293  Q
    |||||||||||| ||| ||||||||||||| |||||| ||  |||||||| ||||||||||       ||||||||| ||||||| | ||||| ||||||    
T  18875415 tgttttcaacttgtttccataagctctccaggatatcttattaaaacagcttataacttgtatgaaatcaatttgactttattttgtcttttgatataga 18875316  T
Q  294 aat 296  Q
    |||    
T  18875315 aat 18875313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 11835263 - 11835192
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttat-atgataaacgtttat 332  Q
    |||||| || ||||||||| |||||||||| |||||||||||||||||  |||||| ||||||| |||||||    
T  11835263 caatttaactttattttatcttttgttataaaaatggtttatacataaacacttatcatgataagcgtttat 11835192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 326
Target Start/End: Original strand, 19113202 - 19113265
Alignment:
Q  263 aatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaac 326  Q
    |||| ||||||||||||| |||||||||| |||| ||||||||||||  | |||||||||||||    
T  19113202 aattcgacattattttattttttgttataaaaatagtttatacataagcaattatatgataaac 19113265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 35960397 - 35960338
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    |||||| ||||||||| |||| |||||||||| |||||| ||||| ||||||||||||||    
T  35960397 tttgactttattttatcttttattatagaaatagtttatgcataaatacttatatgataa 35960338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 35095867 - 35095929
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||||| ||||||||| ||||||||||||||| ||||| | ||||  |||||||||||||    
T  35095867 caatttgactttattttatcttttgttatagaaatagtttaaatataagcacttatatgataa 35095929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 29588858 - 29588809
Alignment:
Q  270 cattattttatattttgttatagaaatggtttatacataattacttatat 319  Q
    ||||||||||||||||||||||||||| | ||||||||||  ||||||||    
T  29588858 cattattttatattttgttatagaaatagcttatacataagcacttatat 29588809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 37063161 - 37063205
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataa 309  Q
    |||||| ||||||||| ||||||||||||||| ||||||||||||    
T  37063161 tttgactttattttatcttttgttatagaaatagtttatacataa 37063205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 332
Target Start/End: Original strand, 28586853 - 28586920
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    |||||| ||||||||| ||||||||||||||| || |||||||||  || |||||||||  |||||||    
T  28586853 tttgactttattttatcttttgttatagaaatagtgtatacataaccacatatatgatagtcgtttat 28586920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 40097194 - 40097147
Alignment:
Q  263 aatttgacattattttatattttgttatagaaatggtttatacataat 310  Q
    |||||||||||||||||| |||||| |||||||| ||||||| |||||    
T  40097194 aatttgacattattttatcttttgtgatagaaatagtttatagataat 40097147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 6593285 - 6593239
Alignment:
Q  263 aatttgacattattttatattttgttatagaaatggtttatacataa 309  Q
    ||||| || ||||||||| ||||||||||||||| ||||||||||||    
T  6593285 aatttaactttattttatcttttgttatagaaattgtttatacataa 6593239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 10272414 - 10272476
Alignment:
Q  161 cttatagaaaaaacttaagacatgtgtgtagactgttttcaacttattttcataagctctcca 223  Q
    |||||||||| |||||| ||||||| ||||   |||||||| ||||||||||||| |||||||    
T  10272414 cttatagaaacaacttatgacatgtctgtaagttgttttcagcttattttcataaactctcca 10272476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 11095557 - 11095611
Alignment:
Q  266 ttgacattattttatattttgttatagaaatggtttatacataattacttatatg 320  Q
    ||||| ||||| |||  |||||||||||||| ||||||||||||| |||||||||    
T  11095557 ttgactttattgtatcatttgttatagaaatagtttatacataatcacttatatg 11095611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 20982223 - 20982281
Alignment:
Q  266 ttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||| |||||||||  |||||||||||||| | ||||||||||  |||||||||||||    
T  20982223 ttgactttattttatcctttgttatagaaatagcttatacataagcacttatatgataa 20982281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 6738492 - 6738553
Alignment:
Q  263 aatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    |||||||| ||||||| | |||| |||| ||||| | |||||||||| ||||||||||||||    
T  6738492 aatttgactttattttgtcttttattattgaaatagcttatacataagtacttatatgataa 6738553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 7096214 - 7096271
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgat 322  Q
    |||||| ||||||||| ||||||||||||||| | ||||||||||  |||| ||||||    
T  7096214 tttgactttattttatcttttgttatagaaatagcttatacataagcacttgtatgat 7096271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 223
Target Start/End: Complemental strand, 10296465 - 10296436
Alignment:
Q  194 tgttttcaacttattttcataagctctcca 223  Q
    ||||||||||||||||||||||||||||||    
T  10296465 tgttttcaacttattttcataagctctcca 10296436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 10303787 - 10303747
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggttta 302  Q
    ||||||||| ||||||||| ||||||||||||||| |||||    
T  10303787 caatttgactttattttatcttttgttatagaaatagttta 10303747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 13224405 - 13224353
Alignment:
Q  272 ttattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||||| ||||||||||||||| | ||||||||||  |||| ||||||||    
T  13224405 ttattttatcttttgttatagaaatagcttatacataagcacttctatgataa 13224353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 14714937 - 14714993
Alignment:
Q  276 tttatattttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    ||||| ||||||||||||||| | ||||||||||| ||||||| || || |||||||    
T  14714937 tttatgttttgttatagaaatagcttatacataatcacttatacgagaagcgtttat 14714993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 26516274 - 26516222
Alignment:
Q  272 ttattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||||| ||||||| ||||||| | ||||||||||  |||||||||||||    
T  26516274 ttattttatcttttgttttagaaatagcttatacataagcacttatatgataa 26516222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 332
Target Start/End: Complemental strand, 31461423 - 31461354
Alignment:
Q  263 aatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    |||||||| ||||||||| ||||||||||||||| | ||||| ||||  |||||||||||| ||||||||    
T  31461423 aatttgactttattttatcttttgttatagaaatagcttatatataaccacttatatgatatacgtttat 31461354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 35459896 - 35459832
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaac 326  Q
    ||||||||| ||||||||| ||||| |||| |||| | ||||||| ||| |||||||||||||||    
T  35459896 caatttgactttattttatcttttggtatacaaatagcttatacaaaatcacttatatgataaac 35459832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 3102676 - 3102609
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    |||||| ||||||||||||||| |||| |||| | ||||||||||  | ||||||||||||| |||||    
T  3102676 tttgactttattttatattttgctataaaaatagcttatacataagcagttatatgataaacatttat 3102609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 332
Target Start/End: Original strand, 9878026 - 9878093
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    |||||| ||| |||||||||||||  | |||| ||||||||||||  ||||||||||| |||||||||    
T  9878026 tttgaccttaatttatattttgttgcataaatagtttatacataagcacttatatgattaacgtttat 9878093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 32837288 - 32837233
Alignment:
Q  271 attattttatattttgttatagaaatggtttatacataattacttatatgataaac 326  Q
    |||||||||| ||||||||||||||| | |||| ||||| | ||||||||||||||    
T  32837288 attattttatcttttgttatagaaatagattatgcataagtgcttatatgataaac 32837233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 34652019 - 34652086
Alignment:
Q  161 cttatagaaaaaacttaagacatgtgtgtagactgttttcaacttattttcataagctctccacgata 228  Q
    |||||||||| |||||| |||||||   ||  ||||||||||||||||| ||||||||||||| ||||    
T  34652019 cttatagaaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagata 34652086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 37034027 - 37033968
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    |||||| ||||||||| |||| |||||||||| |||||||||||| || | |||||||||    
T  37034027 tttgactttattttatctttttttatagaaatagtttatacataagtattcatatgataa 37033968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 324
Target Start/End: Complemental strand, 37053577 - 37053518
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    |||||| ||||||||| || |||||||||||| || |||||||||  |||||||||||||    
T  37053577 tttgactttattttattttctgttatagaaatagtctatacataagcacttatatgataa 37053518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 43635086 - 43635141
Alignment:
Q  163 tatagaaaaaacttaagacatgtgtgtagactgttttcaacttattttcataagct 218  Q
    ||||||||||||||| ||||||| ||||  ||||||| | ||||||||||||||||    
T  43635086 tatagaaaaaacttatgacatgtctgtaagctgttttaagcttattttcataagct 43635141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 7936999 - 7936965
Alignment:
Q  275 ttttatattttgttatagaaatggtttatacataa 309  Q
    |||||| ||||||||||||||||||||||||||||    
T  7936999 ttttatcttttgttatagaaatggtttatacataa 7936965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 332
Target Start/End: Original strand, 33197327 - 33197393
Alignment:
Q  266 ttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    ||||| ||||| ||| ||||||||||||||| | ||||| ||||  ||||||||||||| |||||||    
T  33197327 ttgactttattctatcttttgttatagaaatagcttatagataagcacttatatgataagcgtttat 33197393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 43133940 - 43133890
Alignment:
Q  274 attttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||||||||||| |||||||  ||||||||||| ||||||| ||||||    
T  43133940 attttatattttgttttagaaataatttatacataaatacttatgtgataa 43133890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 41240971 - 41241008
Alignment:
Q  272 ttattttatattttgttatagaaatggtttatacataa 309  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  41240971 ttattttatattttgttataggaatagtttatacataa 41241008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 3673793 - 3673729
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaac 326  Q
    |||||| || |||||||||||||||||||||||||   | ||||||||  |||||||||| ||||    
T  3673793 caatttaactttattttatattttgttatagaaataactaatacataagcacttatatgacaaac 3673729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 7193950 - 7193998
Alignment:
Q  276 tttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||||||||||||||||| | ||||||||   ||||||||||||||    
T  7193950 tttatattttgttatagaaatagcttatacatgggtacttatatgataa 7193998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 10190255 - 10190203
Alignment:
Q  272 ttattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    |||||||||  ||||||||| |||| ||||||||||||  |||||||||||||    
T  10190255 ttattttatcctttgttataaaaatagtttatacataagcacttatatgataa 10190203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 14209253 - 14209193
Alignment:
Q  272 ttattttatattttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    ||||||||| ||||||||| ||||| | ||| ||| ||  |||||||||||||||||||||    
T  14209253 ttattttatcttttgttattgaaatagcttagacagaaacacttatatgataaacgtttat 14209193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 15780055 - 15780003
Alignment:
Q  272 ttattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||||| |||||||||||| || ||||||| ||||  |||||||||||||    
T  15780055 ttattttatcttttgttatagagattgtttataaataagaacttatatgataa 15780003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 32694188 - 32694137
Alignment:
Q  272 ttattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||||| ||||| ||||||||| | |||||||||| ||||||||||||||    
T  32694188 ttattttatcttttgatatagaaatagcttatacataa-tacttatatgataa 32694137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 35329907 - 35329967
Alignment:
Q  266 ttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaac 326  Q
    ||||| ||||||||| || |||||| ||||| |||||| |||||  |||||||||||||||    
T  35329907 ttgactttattttatcttatgttatggaaatagtttatgcataaacacttatatgataaac 35329967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 41809334 - 41809374
Alignment:
Q  269 acattattttatattttgttatagaaatggtttatacataa 309  Q
    |||||||||| | ||||||||||||||| ||||||||||||    
T  41809334 acattattttttcttttgttatagaaatagtttatacataa 41809374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 11262847 - 11262907
Alignment:
Q  272 ttattttatattttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    ||||||| |||||| |||||||||| | |||||||||| |||||||||||||||| |||||    
T  11262847 ttattttgtattttattatagaaataggttatacataaatacttatatgataaacatttat 11262907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 45128406 - 45128456
Alignment:
Q  274 attttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||| ||||||||||||||| |||||||||||| | ||||||||||||    
T  45128406 attttatcttttgttatagaaatagtttatacataagttcttatatgataa 45128456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 327
Target Start/End: Complemental strand, 30024686 - 30024621
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaacg 327  Q
    |||||| || ||||||||| |||||||||||||||   |||| ||||| |||||||||||||||||    
T  30024686 caattttactttattttatcttttgttatagaaataacttatgcataagtacttatatgataaacg 30024621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 4191712 - 4191660
Alignment:
Q  275 ttttatattttgttatagaaatggtttatacataattacttatatgataaacg 327  Q
    |||||| ||||||||||||||| | ||||||||||  ||||||||||||||||    
T  4191712 ttttatcttttgttatagaaatagcttatacataagcacttatatgataaacg 4191660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 24444014 - 24443962
Alignment:
Q  272 ttattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||||||||||||| ||||||| | ||||||||||  |||||||||||||    
T  24444014 ttattttatattttgttgtagaaatcgcttatacataagaacttatatgataa 24443962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 54325124 - 54325183
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    |||||| ||||||||| |||||| |||||||| ||||||||| ||  |||||||||||||    
T  54325124 tttgactttattttatcttttgtaatagaaatagtttatacacaagcacttatatgataa 54325183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 54277402 - 54277460
Alignment:
Q  266 ttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||| ||||||||| ||||||||||||| | ||||||||| || ||||||| ||||||    
T  54277402 ttgactttattttatcttttgttatagaagtagtttatacacaaatacttatctgataa 54277460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 295
Target Start/End: Original strand, 20105917 - 20105950
Alignment:
Q  262 caatttgacattattttatattttgttatagaaa 295  Q
    ||||||||| ||||||||||||||||||||||||    
T  20105917 caatttgactttattttatattttgttatagaaa 20105950  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 24193558 - 24193501
Alignment:
Q  275 ttttatattttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    |||||||||||||| || ||||   |||||||||| |||||||||||||| |||||||    
T  24193558 ttttatattttgttgtaaaaataacttatacataagtacttatatgataagcgtttat 24193501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 296
Target Start/End: Complemental strand, 49219124 - 49219091
Alignment:
Q  263 aatttgacattattttatattttgttatagaaat 296  Q
    |||||||| |||||||||||||||||||||||||    
T  49219124 aatttgactttattttatattttgttatagaaat 49219091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 2980575 - 2980619
Alignment:
Q  282 ttttgttatagaaatggtttatacataattacttatatgataaac 326  Q
    ||||||||||||||| | ||||||||||  |||||||||||||||    
T  2980575 ttttgttatagaaatagcttatacataagcacttatatgataaac 2980619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 23503544 - 23503472
Alignment:
Q  263 aatttgacattattttatattttgttatagaaatggtttatacataattacttat-atgataaacgtttatat 334  Q
    ||||| || ||||||||||||||||||||||| | | ||||||||||  |||||| ||||||| || ||||||    
T  23503544 aatttaactttattttatattttgttatagaattagattatacataagcacttatcatgataagcgcttatat 23503472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 24169315 - 24169283
Alignment:
Q  196 ttttcaacttattttcataagctctccacgata 228  Q
    |||||||||||||||||||||||||||| ||||    
T  24169315 ttttcaacttattttcataagctctccaagata 24169283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 24936287 - 24936239
Alignment:
Q  271 attattttatattttgttatagaaatggtttatacataattacttatat 319  Q
    ||||||||||||||||||||||||||   ||||||||||  ||||||||    
T  24936287 attattttatattttgttatagaaataacttatacataaccacttatat 24936239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 325
Target Start/End: Complemental strand, 36734876 - 36734816
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaa 325  Q
    |||||| ||||||||  ||||||||||||||  | ||||||||||  ||||||||||||||    
T  36734876 tttgactttattttaccttttgttatagaaagagattatacataagcacttatatgataaa 36734816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 47970301 - 47970245
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatga 321  Q
    |||||| | ||||||| ||||||||||||||| | ||||||||||  ||||||||||    
T  47970301 tttgacttcattttatcttttgttatagaaatagcttatacataagcacttatatga 47970245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 51044546 - 51044590
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataa 309  Q
    |||||| ||||||||| ||||||||||||||| | ||||||||||    
T  51044546 tttgactttattttatcttttgttatagaaatagcttatacataa 51044590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 52052565 - 52052502
Alignment:
Q  157 aaaacttatagaaaaaacttaagacatgtgtgtagactgttttcaacttattttcataagctctc 221  Q
    |||||||||||||| |||||| ||||||| | || ||||||||| ||||||||| ||||| ||||    
T  52052565 aaaacttatagaaacaacttatgacatgttttta-actgttttccacttatttttataagttctc 52052502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 52259683 - 52259631
Alignment:
Q  196 ttttcaacttattttcataagctctccacgatatcatacaaaaacagcatata 248  Q
    |||||||||||||||||||||||||||  |||| | || ||||||||| ||||    
T  52259683 ttttcaacttattttcataagctctcccagatagcttataaaaacagcttata 52259631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 322
Target Start/End: Complemental strand, 54986407 - 54986348
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttatatgat 322  Q
    ||||||||| |||| |||| ||||||||||||||| | ||||||||||  |||||||||||    
T  54986407 caatttgactttatcttat-ttttgttatagaaatagcttatacataaaaacttatatgat 54986348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 6721 - 6783
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||||| | | ||||| ||||||||||||||| ||||||||||||  |||||||||||||    
T  6721 caatttgacttaagtttattttttgttatagaaatagtttatacataagcacttatatgataa 6783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 332
Target Start/End: Complemental strand, 5993 - 5935
Alignment:
Q  274 attttatattttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    ||||||| ||||||||| ||||| ||||||||||||  |||||||||||||| ||||||    
T  5993 attttatcttttgttattgaaattgtttatacataaacacttatatgataaatgtttat 5935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 116640 - 116702
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||||| | | ||||| ||||||||||||||| ||||||||||||  |||||||||||||    
T  116640 caatttgacttaagtttattttttgttatagaaatagtttatacataagcacttatatgataa 116702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 50016042 - 50016104
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||||| ||||||||||||| ||||||||||| ||  ||||||||  |||||||||||||    
T  50016042 caatttgactttattttatatttggttatagaaatagtccatacataagcacttatatgataa 50016104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 322
Target Start/End: Complemental strand, 47217343 - 47217283
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttatatgat 322  Q
    |||||| |||||||||||| |||||||| |||||| | ||||| |||| ||||||||||||    
T  47217343 caatttcacattattttatgttttgttagagaaatagcttatagataagtacttatatgat 47217283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 48528554 - 48528502
Alignment:
Q  272 ttattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||||| | ||||||||||||| | |||||||||| ||||||||||||||    
T  48528554 ttattttatttcttgttatagaaatagcttatacataagtacttatatgataa 48528502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 324
Target Start/End: Original strand, 44284145 - 44284204
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    |||||| || |||||| ||||||||||||||| | |||||||| | ||||||||||||||    
T  44284145 tttgactttgttttattttttgttatagaaatagcttatacattagtacttatatgataa 44284204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Original strand, 3044274 - 3044304
Alignment:
Q  193 ctgttttcaacttattttcataagctctcca 223  Q
    |||||||||||||||||||||||||||||||    
T  3044274 ctgttttcaacttattttcataagctctcca 3044304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 25925797 - 25925767
Alignment:
Q  193 ctgttttcaacttattttcataagctctcca 223  Q
    |||||||||||||||||||||||||||||||    
T  25925797 ctgttttcaacttattttcataagctctcca 25925767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 305
Target Start/End: Complemental strand, 34318073 - 34318031
Alignment:
Q  263 aatttgacattattttatattttgttatagaaatggtttatac 305  Q
    |||||||| ||||||||||||||||||||||||| | ||||||    
T  34318073 aatttgactttattttatattttgttatagaaatagcttatac 34318031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 41028939 - 41028997
Alignment:
Q  266 ttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||| ||||||| | ||||||||||||||| | ||||||||||  |||||||||||||    
T  41028939 ttgactttattttttcttttgttatagaaatagcttatacataagcacttatatgataa 41028997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 44374728 - 44374790
Alignment:
Q  262 caatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    ||||||||| ||||||||| |||||||| ||| || | ||||||||||  |||||||||||||    
T  44374728 caatttgactttattttatcttttgttaaagatatagcttatacataagcacttatatgataa 44374790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 308
Target Start/End: Complemental strand, 1395656 - 1395611
Alignment:
Q  263 aatttgacattattttatattttgttatagaaatggtttatacata 308  Q
    |||||||| ||||||||| ||||||||||||||| | |||||||||    
T  1395656 aatttgactttattttatcttttgttatagaaatagcttatacata 1395611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 27792855 - 27792794
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaac 326  Q
    |||||| ||||||||| ||||||| | ||||| | ||||||||||  |||||||||||||||    
T  27792855 tttgaccttattttatcttttgtttttgaaatagcttatacataagcacttatatgataaac 27792794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 33307665 - 33307726
Alignment:
Q  263 aatttgacattattttatattttgttatagaaatggtttatacataattacttatatgataa 324  Q
    |||||||| |||||| |||||||||||  ||||| | ||||||||||  |||||||||||||    
T  33307665 aatttgactttatttcatattttgttactgaaatagcttatacataagcacttatatgataa 33307726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 334
Target Start/End: Original strand, 51278244 - 51278313
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaacgtttatat 334  Q
    |||||| |||||| |||||||||||||||||| | |||||||| |  | |||||||||||| | ||||||    
T  51278244 tttgactttatttaatattttgttatagaaatagcttatacattagcaattatatgataaatgcttatat 51278313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 326
Target Start/End: Original strand, 52450139 - 52450200
Alignment:
Q  265 tttgacattattttatattttgttatagaaatggtttatacataattacttatatgataaac 326  Q
    |||||| |||||| || ||||||||||||||| | |||| ||||| ||||| ||||||||||    
T  52450139 tttgactttatttcatcttttgttatagaaattgcttatgcataagtacttgtatgataaac 52450200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 16790182 - 16790242
Alignment:
Q  272 ttattttatattttgttatagaaatggtttatacataattacttatatgataaacgtttat 332  Q
    ||||||||| |||||||||||||||   ||||| ||||  |||||||||||||||| ||||    
T  16790182 ttattttatcttttgttatagaaataacttatatataagcacttatatgataaacgcttat 16790242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 24280763 - 24280731
Alignment:
Q  196 ttttcaacttattttcataagctctccacgata 228  Q
    |||||||||||||||||||||||||||| ||||    
T  24280763 ttttcaacttattttcataagctctccatgata 24280731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 220
Target Start/End: Complemental strand, 32064495 - 32064467
Alignment:
Q  192 actgttttcaacttattttcataagctct 220  Q
    |||||||||||||||||||||||||||||    
T  32064495 actgttttcaacttattttcataagctct 32064467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 34958310 - 34958254
Alignment:
Q  266 ttgacattattttatattttgttatagaaatggtttatacataattacttatatgat 322  Q
    ||||| ||||||||| || |||||||||||| |||||| ||||| | ||||||||||    
T  34958310 ttgactttattttatcttgtgttatagaaatagtttattcataagtgcttatatgat 34958254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 69028 - 69073
Alignment:
Q  263 aatttgacattattttatattttgttatagaaatggtttatacata 308  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||||    
T  69028 aatttgactttattttatattttggtatagaaattgtttatacata 69073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 42592 - 42540
Alignment:
Q  273 tattttatattttgttatagaaatggtttatacataattacttatatgataaa 325  Q
    |||||||| ||||||||||||||||  ||||||||||  ||||||||||||||    
T  42592 tattttatcttttgttatagaaatgacttatacataagcacttatatgataaa 42540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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