View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9630H-LTR4-TNT-insertion-2 (Length: 331)
Name: F9630H-LTR4-TNT-insertion-2
Description: F9630H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9630H-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 44627824 - 44627514
Alignment:
| Q |
9 |
agaagaaacaagaactagtgcagttaatgctagtgccaagaagagagccaaaaattgagaagaacaagtggaagaagctttcatcttaataaaagtactc |
108 |
Q |
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| T |
44627824 |
agaagaaacaagaactagtgcagttaatgctagtgccaagaagagagccaaaaattgagaagaacaagtggaagaagctttcatcttaataaaagtactc |
44627725 |
T |
|
| Q |
109 |
ctatcttgattgattatactgctttgaattcaatgtgatgaagttggtgttcaagaaagaattaaaatggnnnnnnnnnnnnnnnnnnnnnatgcatttc |
208 |
Q |
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| T |
44627724 |
ctatcttgattgattatactgctttgaattcaatgtgatgaagttggtgttcaagaaagaattaaaatgg--gtgtgtatgtgtgtgtgtgatgcatttc |
44627627 |
T |
|
| Q |
209 |
ttggttatcaaatattctttactgcatgataccnnnnnnnnnnnnnnnntattctttactgcacatatatgctaagtatactagcgtatcaagcggtaag |
308 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44627626 |
ttggttatcaaatattctttactgcatgataccaaaaataaataaaaaatattctttactgcacatatatgctaagtatactagcgtatcaagcggtaag |
44627527 |
T |
|
| Q |
309 |
agtaacttaatta |
321 |
Q |
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||||||||||||| |
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| T |
44627526 |
agtaacttaatta |
44627514 |
T |
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