View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: F9630H-LTR4-TNT-insertion-3 (Length: 271)

Name: F9630H-LTR4-TNT-insertion-3
Description: F9630H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] F9630H-LTR4-TNT-insertion-3
F9630H-LTR4-TNT-insertion-3
[»] chr2 (15 HSPs)
chr2 (8-262)||(11470942-11471196)
chr2 (156-240)||(11470258-11470342)
chr2 (150-239)||(11468502-11468590)
chr2 (150-239)||(11468939-11469027)
chr2 (150-239)||(11469376-11469464)
chr2 (150-239)||(11469813-11469901)
chr2 (156-240)||(11467847-11467930)
chr2 (150-220)||(11468061-11468132)
chr2 (149-203)||(11477513-11477567)
chr2 (138-203)||(11484076-11484142)
chr2 (150-242)||(11468283-11468374)
chr2 (150-242)||(11469157-11469248)
chr2 (150-242)||(11469594-11469685)
chr2 (150-198)||(11468720-11468768)
chr2 (156-239)||(11470040-11470122)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 8 - 262
Target Start/End: Complemental strand, 11471196 - 11470942
Alignment:
Q  8 agttttgatggacaaaactgagaagagataaatattcatgtttgtgctaactatgatgatgatgatgttaattaagtgtgtaggaggtaccgcaaaaaac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11471196 agttttgatggacaaaactgagaagagataaatattcatgtttgtgctaactatgatgatgatgatgttaattaagtgtgtaggaggtaccgcaaaaaac 11471097  T
Q  108 ttgggaggaaattcttgaaactagtagtacttagaaattaataaaagatggttcaaaattgttaagcttcaaacaaatatttattcaccaatagatacag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11471096 ttgggaggaaattcttgaaactagtagtacttagaaattaataaaagatggttcaaaattgttaagcttcaaacaaatatttattcaccaatagatacag 11470997  T
Q  208 taaggtgtcttttgagatattctaagctatgacatacaatagagcacatcaattg 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11470996 taaggtgtcttttgagatattctaagctatgacatacaatagagcacatcaattg 11470942  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 240
Target Start/End: Original strand, 11470258 - 11470342
Alignment:
Q  156 tggttcaaaattgttaagcttcaaacaaatatttattcaccaatagatacagtaaggtgtcttttgagatattctaagctatgac 240  Q
    |||||||| |||||||||||| ||||||||||||||| ||||| ||||  || ||||||||||||||||| ||||||||||||||    
T  11470258 tggttcaacattgttaagcttgaaacaaatatttatttaccaaaagatggagaaaggtgtcttttgagatgttctaagctatgac 11470342  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 11468502 - 11468590
Alignment:
Q  150 aaaagatggttcaaaattgttaagcttcaaacaaatatttattcaccaatagatacagtaaggtgtcttttgagatattctaagctatga 239  Q
    ||||| |||||||| |||||||||||| ||||||||||||||||||||| ||||  ||||||||| | |||||||| ||||||| |||||    
T  11468502 aaaagttggttcaacattgttaagcttgaaacaaatatttattcaccaaaagatggagtaaggtg-cctttgagatgttctaagttatga 11468590  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 11468939 - 11469027
Alignment:
Q  150 aaaagatggttcaaaattgttaagcttcaaacaaatatttattcaccaatagatacagtaaggtgtcttttgagatattctaagctatga 239  Q
    ||||| |||||||| |||||||||||| ||||||||||||||||||||| ||||  ||||||||| | |||||||| ||||||| |||||    
T  11468939 aaaagttggttcaacattgttaagcttgaaacaaatatttattcaccaaaagatggagtaaggtg-cctttgagatgttctaagttatga 11469027  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 11469376 - 11469464
Alignment:
Q  150 aaaagatggttcaaaattgttaagcttcaaacaaatatttattcaccaatagatacagtaaggtgtcttttgagatattctaagctatga 239  Q
    ||||| |||||||| |||||||||||| ||||||||||||||||||||| ||||  ||||||||| | |||||||| ||||||| |||||    
T  11469376 aaaagttggttcaacattgttaagcttgaaacaaatatttattcaccaaaagatggagtaaggtg-cctttgagatgttctaagttatga 11469464  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 239
Target Start/End: Original strand, 11469813 - 11469901
Alignment:
Q  150 aaaagatggttcaaaattgttaagcttcaaacaaatatttattcaccaatagatacagtaaggtgtcttttgagatattctaagctatga 239  Q
    ||||| |||||||| |||||||||||| ||||||||||||||||||||| ||||  ||||||||| | |||||||| ||||||| |||||    
T  11469813 aaaagttggttcaacattgttaagcttgaaacaaatatttattcaccaaaagatggagtaaggtg-cctttgagatgttctaagttatga 11469901  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 240
Target Start/End: Original strand, 11467847 - 11467930
Alignment:
Q  156 tggttcaaaattgttaagcttcaaacaaatatttattcaccaatagatacagtaaggtgtcttttgagatattctaagctatgac 240  Q
    ||||| || |||||||||||| ||| ||||||||||||||||| | ||  ||||||||| |||||||||| ||||||||||||||    
T  11467847 tggtttaacattgttaagcttgaaataaatatttattcaccaaaacatggagtaaggtg-cttttgagatgttctaagctatgac 11467930  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 11468061 - 11468132
Alignment:
Q  150 aaaagatggttcaaaattgttaagcttcaaacaaatatttattcaccaatagatacagt-aaggtgtctttt 220  Q
    ||||| |||||||| |||||||||||| ||||||||||||||||||||| || || ||| ||||||||||||    
T  11468061 aaaagttggttcaacattgttaagcttgaaacaaatatttattcaccaaaagttagagtaaaggtgtctttt 11468132  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 11477567 - 11477513
Alignment:
Q  149 taaaagatggttcaaaattgttaagcttcaaacaaatatttattcaccaatagat 203  Q
    |||||||||||||||||| ||||||||| |||||||||| |||||||||| ||||    
T  11477567 taaaagatggttcaaaatcgttaagcttgaaacaaatatatattcaccaaaagat 11477513  T

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Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 11484142 - 11484076
Alignment:
Q  138 ttagaaattaataaaagatggttcaaaat-tgttaagcttcaaacaaatatttattcaccaatagat 203  Q
    |||| ||||| |||||||||||||||||  |||||||||| ||||||||||||||||||||| ||||    
T  11484142 ttagcaattattaaaagatggttcaaaaactgttaagcttgaaacaaatatttattcaccaaaagat 11484076  T

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Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 11468283 - 11468374
Alignment:
Q  150 aaaagatggttcaaaattgttaagcttcaaacaaatatttattcaccaatagatacagtaaggtgtcttttgagatattctaagctatgacat 242  Q
    ||||| |||||||| ||||||||| || ||||||||||||||||||||| |  |  ||||||||| | ||| |||| ||||||||||||||||    
T  11468283 aaaagttggttcaacattgttaagtttgaaacaaatatttattcaccaaaatgtggagtaaggtg-cctttaagatgttctaagctatgacat 11468374  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 11469157 - 11469248
Alignment:
Q  150 aaaagatggttcaaaattgttaagcttcaaacaaatatttattcaccaatagatacagtaaggtgtcttttgagatattctaagctatgacat 242  Q
    ||||| |||||||| ||||||||| || ||||||||||||||||||||| |  |  ||||||||| | ||| |||| ||||||||||||||||    
T  11469157 aaaagttggttcaacattgttaagtttgaaacaaatatttattcaccaaaatgtggagtaaggtg-cctttaagatgttctaagctatgacat 11469248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 11469594 - 11469685
Alignment:
Q  150 aaaagatggttcaaaattgttaagcttcaaacaaatatttattcaccaatagatacagtaaggtgtcttttgagatattctaagctatgacat 242  Q
    ||||| |||||||| ||||||||| || ||||||||||||||||||||| |  |  ||||||||| | ||| |||| ||||||||||||||||    
T  11469594 aaaagttggttcaacattgttaagtttgaaacaaatatttattcaccaaaatgtggagtaaggtg-cctttaagatgttctaagctatgacat 11469685  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 11468720 - 11468768
Alignment:
Q  150 aaaagatggttcaaaattgttaagcttcaaacaaatatttattcaccaa 198  Q
    ||||| |||||||| ||||||||| || |||||||||||||||||||||    
T  11468720 aaaagttggttcaacattgttaagtttgaaacaaatatttattcaccaa 11468768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 11470040 - 11470122
Alignment:
Q  156 tggttcaaaattgttaagcttcaaacaaatatttattcaccaatagatacagtaaggtgtcttttgagatattctaagctatga 239  Q
    |||| ||| |||||||||||  ||| ||||||||||||||||||||||  ||||||| | | |||||||| ||||||| |||||    
T  11470040 tggtacaacattgttaagctcgaaaaaaatatttattcaccaatagatggagtaaggag-cctttgagattttctaagttatga 11470122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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