View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: F9630H-LTR4-TNT-insertion-4 (Length: 823)
Name: F9630H-LTR4-TNT-insertion-4
Description: F9630H-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] F9630H-LTR4-TNT-insertion-4 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 778; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 778; E-Value: 0
Query Start/End: Original strand, 8 - 816
Target Start/End: Original strand, 39400184 - 39400992
Alignment:
| Q |
8 |
gcccaggcctctgcaagaccatcttgtccattggagacgttgccggattatatagttacaagcttaaacaaaagttgatgttttgtttgttccaataaca |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39400184 |
gcccaggcctctgcaagaccatcttgtccattggagacgttgccggattatatagttacaagcttaaacaaaagttgatgttttgtttgttccaataaca |
39400283 |
T |
|
| Q |
108 |
agaacaatgcttttcatttagtatgttctttcaatttgaaacttctgtttcagggtatatgtttatgtttattctaatagcaagaacaagttatgtgttt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39400284 |
agaacaatgcttttcatttagtatgttctttcaatttgaaacttctgtttcagggtatatgtttatgtttattctaatagcaagaacaagttatgtgttt |
39400383 |
T |
|
| Q |
208 |
tggtcgtgtttccccgaaccatgcctactgtcattatattcagcatttcaccccatcctgcatatctacttcctgtcttctatgtgttacaatagaaatc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39400384 |
tggtcgtgtttccccgaaccatgcctactgtcattatattcagcatttcaccccatcctgcatatctacttcctgtcttctatgtgttacaatagaaatc |
39400483 |
T |
|
| Q |
308 |
ttacttatgtactaaaacagttaaccatctaatacgcattggtttgattttctatgctatgtaaattgtaaatttctgtttcataaatcttattacagtt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39400484 |
ttacttatgtactaaaacagttaaccatctaatatgcattggtttgattttctatgctatgtaaattgtaaatttctgtttcataaatcttattacagtt |
39400583 |
T |
|
| Q |
408 |
tttagtgtagtattatcttttatatggtgattcattcctattcttgattgacatatttggtggatctgttatattgtttgttataaataaatggttcact |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39400584 |
tttagtgtagtattatcttttatatggtgattcattcctattcttgattgacatatttggtggatctgttatattgtttgttataaataaatggttcact |
39400683 |
T |
|
| Q |
508 |
ctatttctacttgagctttgattaatctcttgcgtattgtaagaagcaaaactagcaaaccatatttccaaccacatatataaatagttgaaagtattgt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39400684 |
ctatttctacttgagctttgattaatctcttgcgtattgtaagaagcaaaactagcaaaccatatttccaaccacatatataaatagttgaaagtattgt |
39400783 |
T |
|
| Q |
608 |
gtggctgcttctcacatgcctcctttctttcatttgctgaagcatggttccaactgctaatgttgtgtgaatcaaaccgacggattaaggtattgacnnn |
707 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39400784 |
gtggctgcttctcacatgcctcctttctttcatttgctgaagcatggttccaactgctaatgttgtgtgaatcaaaccgacggattaaggtattgacttt |
39400883 |
T |
|
| Q |
708 |
nnnnnnctgtagtcaaagtcatgctcaaaagtagtttgtgtattttataaaggaactagttcctggctgcaaagaatctttttaagataaccaacttgtc |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39400884 |
ttttttctgtagtcaaagtcatgctcaaaagtagtttgtgtattttataaaggaactagttcctggctgcaaagaatctttttaagataaccaacttgtc |
39400983 |
T |
|
| Q |
808 |
catcaattg |
816 |
Q |
| |
|
||||||||| |
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|
| T |
39400984 |
catcaattg |
39400992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 587 - 806
Target Start/End: Complemental strand, 1162827 - 1162612
Alignment:
| Q |
587 |
ataaatagttgaaagtattgtgtggctgcttctcacatgcctcctttctttcatttgctgaagcatggttccaactgctaatgttgtgtgaatcaaaccg |
686 |
Q |
| |
|
|||||||| | ||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||| |||| ||||| |||| ||||||||| |
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|
| T |
1162827 |
ataaatagattaaagtatagtgtggctgcttctcatatgcgtcctttctttcatttgctgaagcatggtgccaattgctactgtta---gaatcaaactc |
1162731 |
T |
|
| Q |
687 |
acggattaaggtattgacnnnnnnnnnctgtagtcaaagtcatgctcaaaagtagtttgtgtattttataaaggaactagttcctggctgcaaagaatct |
786 |
Q |
| |
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| |||| ||||||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||| |
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| T |
1162730 |
atggatcaaggtattgactacttttt-ctgtagtcaacgtcatgctcaaaagcagtttgtgcattttataaaggaactagttcctggccgcgaagaatct |
1162632 |
T |
|
| Q |
787 |
ttttaagataaccaacttgt |
806 |
Q |
| |
|
|||||||||| |||||||| |
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|
| T |
1162631 |
ctttaagataaacaacttgt |
1162612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 606 - 774
Target Start/End: Original strand, 40419290 - 40419460
Alignment:
| Q |
606 |
gtgtggctgcttctcacatgcctcctttctttcatttgctgaagcatggttc---caactgctaatgttgtgtgaatcaaaccgacggattaaggtattg |
702 |
Q |
| |
|
|||| ||||||||| | |||| |||||||||||||| ||||||||||||| |||||||| ||||||| ||||||||| ||||||| ||||||||| |
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|
| T |
40419290 |
gtgttgctgcttctaatatgcgtcctttctttcattcgctgaagcatggtggtggcaactgcttctgttgtgagaatcaaacggacggatcaaggtattg |
40419389 |
T |
|
| Q |
703 |
acnnnnnnnnnctgtagtcaaagtcatgctcaaaagtagtttgtgtattttataaaggaactagttcctggc |
774 |
Q |
| |
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|| ||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| |||| |
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|
| T |
40419390 |
acttcttttt-ctgtagttaaagtcatgctcaaaagtagtttgtgcattgtataaaggaactagttcttggc |
40419460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 587 - 683
Target Start/End: Original strand, 40412373 - 40412472
Alignment:
| Q |
587 |
ataaatagttgaaagtattgtgtggctgcttctcacatgcctcctttctttcatttgctgaagcat---ggttccaactgctaatgttgtgtgaatcaaa |
683 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||| |
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| T |
40412373 |
ataaatagttgaaagtatagtgtggctgcttctcatacatgtcctttctttcatttgctgaagcatggcggtgccaactgctactgttgtgtgaatcaaa |
40412472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 436 - 570
Target Start/End: Original strand, 40412190 - 40412332
Alignment:
| Q |
436 |
gattcattcctattcttgattgacatatttggtggatctgttatattgtttgttata--------aataaatggttcactctatttctacttgagctttg |
527 |
Q |
| |
|
||||||||||| | || |||||| |||||| |||||||||||| ||||||| ||||| ||||||| ||||||||||||| | |||||| | || |
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| T |
40412190 |
gattcattcctgtgctggattgaaatattttgtggatctgttacattgttttttataaatatataaataaatagttcactctatttgttcttgagttctg |
40412289 |
T |
|
| Q |
528 |
attaatctcttgcgtattgtaagaagcaaaactagcaaaccat |
570 |
Q |
| |
|
|||||||| | |||| ||||||||||||||| ||||||||| |
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|
| T |
40412290 |
attaatctactaagtatcgtaagaagcaaaactggcaaaccat |
40412332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 476 - 535
Target Start/End: Complemental strand, 1162954 - 1162895
Alignment:
| Q |
476 |
ttatattgtttgttataaataaatggttcactctatttctacttgagctttgattaatct |
535 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| |||| |||||||| |||||||||||| |
|
|
| T |
1162954 |
ttatattgtttgttataaacaaatagttcactccatttgtacttgagttttgattaatct |
1162895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 747 - 806
Target Start/End: Original strand, 40412478 - 40412539
Alignment:
| Q |
747 |
gtattttataaaggaactagttcctggctgcaaagaatcttttt--aagataaccaacttgt |
806 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||| ||| ||||||| |||||||| |
|
|
| T |
40412478 |
gtattttataaaggaactagttcctggctactaagaatctctttaaaagataagcaacttgt |
40412539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 436 - 496
Target Start/End: Original strand, 38988351 - 38988411
Alignment:
| Q |
436 |
gattcattcctattcttgattgacatatttggtggatctgttatattgtttgttataaata |
496 |
Q |
| |
|
||||||||||| | || | || | |||||| |||||||||||||||||||||||||||||| |
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|
| T |
38988351 |
gattcattcctgtgctgggtttaaatattttgtggatctgttatattgtttgttataaata |
38988411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 115
Target Start/End: Original strand, 38988107 - 38988141
Alignment:
| Q |
81 |
gttgatgttttgtttgttccaataacaagaacaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
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|
| T |
38988107 |
gttgatgttttgtttgttccaataacaacaacaat |
38988141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 587 - 779
Target Start/End: Complemental strand, 25911352 - 25911162
Alignment:
| Q |
587 |
ataaatagttgaaagtattgtgtggctgcttctcacatgcctcctttctttcatttgctgaagcatggttccaactgctaatgttgtgtgaatcaaaccg |
686 |
Q |
| |
|
||||||| |||||||||| || ||| ||||||||| |||| |||||||||||||||||||||||||||| | |||||||| ||| ||| ||||||| | |
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|
| T |
25911352 |
ataaataattgaaagtatagtctggttgcttctcagatgcgtcctttctttcatttgctgaagcatggtgctaactgctactgtagtgagaatcaatcgt |
25911253 |
T |
|
| Q |
687 |
acggattaaggtattgacnnnnnnnnnctgtagtcaaagtcatgctcaaaagtagtttgtgtattttataaaggaactagttcctggctgcaa |
779 |
Q |
| |
|
|||||| ||||| ||||| |||||| ||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| |
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|
| T |
25911252 |
acggatcaaggttttgac-ttctttttctgtagataaagtcatgctcaaaagtaatttgtgcattttataaaggaac-agttcttggctgcaa |
25911162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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